Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46856 * 2 1 4 4 C 1.36895 * 120.00035 * 263.90538 * 3 2 1 5 5 H 1.08003 * 120.00141 * 140.37382 * 4 3 2 6 6 C 1.39005 * 119.99843 * 320.38298 * 4 3 2 7 7 N 1.31397 * 119.99824 * 163.22162 * 6 4 3 8 8 Si 1.86801 * 120.00048 * 343.22130 * 6 4 3 9 9 H 1.48500 * 109.46996 * 89.48668 * 8 6 4 10 10 H 1.48497 * 109.47111 * 209.48646 * 8 6 4 11 11 H 1.48494 * 109.47278 * 329.48573 * 8 6 4 12 12 C 1.34781 * 120.00554 * 83.90885 * 3 2 1 13 13 O 1.21721 * 120.00295 * 181.98360 * 12 3 2 14 14 C 1.46555 * 119.99513 * 1.98821 * 12 3 2 15 15 C 1.36785 * 126.17835 * 172.11356 * 14 12 3 16 16 N 1.30942 * 113.92139 * 179.97438 * 15 14 12 17 17 C 1.29380 * 117.46782 * 0.02562 * 16 15 14 18 18 C 1.50704 * 124.70261 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.46788 * 90.02413 * 18 17 16 20 20 C 1.42902 * 114.00096 * 180.02562 * 19 18 17 21 21 S 1.70921 * 110.59460 * 359.97438 * 17 16 15 22 22 H 1.08998 * 109.47048 * 60.00515 * 1 2 3 23 23 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47568 * 300.00358 * 1 2 3 25 25 H 1.08996 * 109.47131 * 239.99422 * 2 1 3 26 26 H 1.09007 * 109.46559 * 119.99196 * 2 1 3 27 27 H 0.97002 * 119.99724 * 180.02562 * 7 6 4 28 28 H 1.07999 * 123.04009 * 0.26805 * 15 14 12 29 29 H 1.08995 * 109.47094 * 210.02088 * 18 17 16 30 30 H 1.08999 * 109.46726 * 330.02871 * 18 17 16 31 31 H 1.09007 * 109.46554 * 59.99586 * 20 19 18 32 32 H 1.08991 * 109.47663 * 180.02562 * 20 19 18 33 33 H 1.09004 * 109.46888 * 300.00519 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3651 1.9846 -1.1788 5 1 2.1145 3.0213 -1.3490 6 6 3.0396 1.2629 -2.1569 7 7 3.0846 1.7120 -3.3909 8 14 3.8818 -0.3453 -1.7169 9 1 2.9243 -1.4678 -1.8853 10 1 5.0499 -0.5529 -2.6100 11 1 4.3409 -0.2937 -0.3056 12 6 2.1262 2.0579 1.1606 13 8 2.4974 3.2171 1.1570 14 6 1.7965 1.3980 2.4269 15 6 2.0017 1.9068 3.6800 16 7 1.6160 1.1111 4.6458 17 6 1.1023 -0.0282 4.3111 18 6 0.6066 -1.0653 5.2858 19 8 -0.7752 -0.8331 5.5664 20 6 -1.3464 -1.7662 6.4858 21 16 1.0639 -0.1941 2.6104 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.5550 1.2082 -4.0735 28 1 2.4377 2.8789 3.8566 29 1 0.7275 -2.0581 4.8526 30 1 1.1810 -0.9994 6.2098 31 1 -0.8123 -1.7144 7.4346 32 1 -2.3965 -1.5222 6.6458 33 1 -1.2658 -2.7738 6.0780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284997209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = -33.871434 kcal Electronic energy + Delta-G solvation = -18656.426169 eV Core-core repulsion = 15616.603007 eV Total energy + Delta-G solvation = -3039.823163 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16009 -40.34760 -38.68135 -37.26531 -34.56114 -32.50289 -31.63817 -29.71955 -27.44713 -26.71062 -24.94040 -24.69328 -22.67255 -20.11362 -19.65047 -19.03831 -17.88307 -17.60636 -17.48363 -16.86835 -16.45351 -16.20089 -15.77450 -15.57433 -15.07026 -14.95852 -14.50899 -14.27887 -13.96889 -13.64524 -13.26926 -13.17895 -12.85713 -12.72028 -12.56939 -12.33148 -12.19734 -11.85756 -11.21364 -10.86624 -10.68711 -10.51994 -10.36657 -10.04318 -9.72033 -8.59122 -6.27135 -0.84734 0.14654 0.59125 1.11611 1.25899 1.38711 1.41312 2.09492 2.17381 2.40957 2.74449 2.85331 3.34650 3.62533 3.81187 3.89742 4.13398 4.19656 4.24367 4.30339 4.41890 4.57502 4.63453 4.77435 4.80630 4.92447 5.03265 5.24876 5.42859 5.92395 6.11403 6.37105 6.59369 6.74025 7.06906 7.60702 8.56805 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.005886 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.423308 B = 4755.527280 C = 5142.627181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.060 3.940 3 N -0.459 5.459 4 C -0.333 4.333 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.900 5.900 8 Si 0.937 3.063 9 H -0.220 1.220 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.526 3.474 13 O -0.602 6.602 14 C -0.302 4.302 15 C 0.096 3.904 16 N -0.481 5.481 17 C -0.007 4.007 18 C 0.140 3.860 19 O -0.412 6.412 20 C 0.025 3.975 21 S 0.285 5.715 22 H 0.057 0.943 23 H 0.114 0.886 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.285 0.715 28 H 0.181 0.819 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -16.450 15.318 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.063 4.063 3 N -0.179 5.179 4 C -0.461 4.461 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.537 5.537 8 Si 0.759 3.241 9 H -0.144 1.144 10 H -0.206 1.206 11 H -0.188 1.188 12 C 0.316 3.684 13 O -0.488 6.488 14 C -0.426 4.426 15 C -0.063 4.063 16 N -0.197 5.197 17 C -0.280 4.280 18 C 0.061 3.939 19 O -0.331 6.331 20 C -0.071 4.071 21 S 0.544 5.456 22 H 0.076 0.924 23 H 0.133 0.867 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.198 0.802 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.235 -16.496 14.931 23.396 hybrid contribution 1.173 1.108 -0.088 1.616 sum -6.062 -15.388 14.842 22.222 Atomic orbital electron populations 1.22291 0.92717 1.04970 1.02415 1.22507 0.97866 0.83573 1.02377 1.43704 1.56485 1.12818 1.04865 1.18663 1.38304 0.97919 0.91251 0.93028 1.26173 0.95410 1.02797 0.94036 1.69785 1.40191 1.41891 1.01793 0.86059 0.79399 0.79394 0.79252 1.14446 1.20568 1.18766 1.17343 0.81627 0.86884 0.82567 1.90659 1.52653 1.18600 1.86851 1.26215 1.15144 1.02442 0.98819 1.22362 0.98285 1.00428 0.85181 1.66196 1.13651 1.03527 1.36340 1.28129 1.01231 0.97209 1.01449 1.20999 0.83339 0.93441 0.96161 1.87927 1.23256 1.56003 1.65939 1.23022 0.99482 0.92617 0.91930 1.83942 1.51676 1.11086 0.98883 0.92403 0.86727 0.92218 0.89237 0.89699 0.90480 0.80178 0.87569 0.89315 0.92700 0.88524 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.05 9.02 71.98 0.65 -4.40 16 2 C 0.06 2.26 4.18 86.38 0.36 2.62 16 3 N -0.46 -22.74 2.18 -640.18 -1.39 -24.13 16 4 C -0.33 -19.53 9.37 84.09 0.79 -18.74 16 5 H 0.05 3.54 7.93 -2.91 -0.02 3.51 16 6 C 0.02 1.08 5.35 84.94 0.45 1.54 16 7 N -0.90 -52.11 13.96 21.67 0.30 -51.81 16 8 Si 0.94 39.68 24.98 68.60 1.71 41.40 16 9 H -0.22 -7.67 6.48 99.48 0.64 -7.02 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 12 C 0.53 26.53 7.55 86.41 0.65 27.18 16 13 O -0.60 -35.59 16.77 -4.41 -0.07 -35.67 16 14 C -0.30 -11.94 6.19 24.10 0.15 -11.79 16 15 C 0.10 3.58 11.18 84.48 0.94 4.53 16 16 N -0.48 -15.97 10.50 -189.50 -1.99 -17.96 16 17 C -0.01 -0.20 7.00 88.47 0.62 0.42 16 18 C 0.14 2.61 6.51 71.24 0.46 3.08 16 19 O -0.41 -8.60 10.69 -148.98 -1.59 -10.19 16 20 C 0.03 0.29 11.01 113.37 1.25 1.54 16 21 S 0.29 7.96 15.69 -56.49 -0.89 7.07 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.06 1.81 6.19 -3.86 -0.02 1.79 16 25 H 0.09 3.37 3.29 -2.39 -0.01 3.37 16 26 H 0.09 2.75 4.37 -21.32 -0.09 2.66 16 27 H 0.29 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.18 6.62 8.06 -2.91 -0.02 6.60 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.50 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -76.14 287.94 3.39 -72.75 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.98 Total: 12.55 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.33 Total: 5.98 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.08 Total: -93.90 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -1.67 Total: -45.86 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.71 Total: 41.40 kcal Atomic # 16 Polarization: 7.96 SS G_CDS: -0.89 Total: 7.07 kcal Total: -76.14 3.39 -72.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284997209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.882 kcal (2) G-P(sol) polarization free energy of solvation -76.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds