Wall clock time and date at job start Mon Mar 30 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00397 * 2 1 4 4 C 1.50692 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.29427 * 124.80906 * 90.02120 * 4 3 2 6 6 C 1.30946 * 117.37030 * 179.97438 * 5 4 3 7 7 C 1.35663 * 114.18495 * 0.02562 * 6 5 4 8 8 C 1.46684 * 126.12715 * 179.97438 * 7 6 5 9 9 O 1.21694 * 119.99975 * 351.66790 * 8 7 6 10 10 N 1.34770 * 120.00215 * 171.66747 * 8 7 6 11 11 C 1.46501 * 120.00074 * 0.48029 * 10 8 7 12 12 C 1.46505 * 120.00238 * 180.48119 * 10 8 7 13 13 C 1.50699 * 109.47099 * 89.99904 * 12 10 8 14 14 H 1.07995 * 120.00354 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99742 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00261 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00022 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47045 * 59.99768 * 17 15 13 19 19 H 1.48499 * 109.47537 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47141 * 300.00443 * 17 15 13 21 21 S 1.70959 * 124.80245 * 269.98125 * 4 3 2 22 22 H 1.09003 * 109.47425 * 300.00390 * 1 2 3 23 23 H 1.09004 * 109.46856 * 60.00057 * 1 2 3 24 24 H 1.08995 * 109.47202 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46908 * 59.99364 * 3 2 1 26 26 H 1.09005 * 109.46779 * 299.99719 * 3 2 1 27 27 H 1.07995 * 122.90277 * 179.73067 * 6 5 4 28 28 H 1.09006 * 109.47323 * 83.53029 * 11 10 8 29 29 H 1.08996 * 109.47393 * 203.53596 * 11 10 8 30 30 H 1.09004 * 109.46884 * 323.53340 * 11 10 8 31 31 H 1.08999 * 109.46946 * 210.00092 * 12 10 8 32 32 H 1.08996 * 109.46847 * 329.99589 * 12 10 8 33 33 H 0.96994 * 120.00235 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2495 1.1283 -1.0617 6 6 5.5438 1.0262 -0.8916 7 6 5.9329 0.9950 0.4076 8 6 7.3121 0.8856 0.8950 9 8 8.2175 0.6609 0.1135 10 7 7.5766 1.0340 2.2081 11 6 6.4853 1.2940 3.1503 12 6 8.9554 0.9352 2.6934 13 6 9.5957 2.2991 2.6681 14 1 9.0320 3.1541 2.3253 15 6 10.9010 2.4556 3.0837 16 7 11.5871 1.4147 3.5026 17 14 11.6947 4.1463 3.0531 18 1 10.9268 5.0694 3.9269 19 1 13.0919 4.0464 3.5460 20 1 11.6959 4.6674 1.6625 21 16 4.4846 1.1101 1.4048 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8901 27 1 6.2408 0.9670 -1.7145 28 1 6.0181 0.3511 3.4345 29 1 6.8817 1.7854 4.0388 30 1 5.7440 1.9391 2.6786 31 1 8.9547 0.5529 3.7142 32 1 9.5185 0.2573 2.0520 33 1 12.5055 1.5247 3.7946 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285222854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:38 Heat of formation + Delta-G solvation = -23.163198 kcal Electronic energy + Delta-G solvation = -17967.175637 eV Core-core repulsion = 14927.816818 eV Total energy + Delta-G solvation = -3039.358819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89312 -38.79467 -37.90143 -35.01033 -32.76526 -31.48224 -28.92323 -27.71419 -26.55213 -25.88488 -24.11130 -23.03034 -20.69239 -18.76867 -18.06842 -16.86752 -16.60187 -16.38348 -16.08900 -15.62502 -15.06227 -14.94794 -14.60460 -14.03168 -13.74509 -13.13226 -12.82688 -12.74420 -12.62511 -12.28788 -12.14045 -11.75964 -11.37885 -11.30071 -10.96644 -10.65499 -10.23137 -10.12570 -9.78607 -9.53124 -9.27219 -9.24187 -8.88008 -8.48561 -7.81081 -6.10034 -4.15691 0.33461 1.26746 1.69923 2.57759 3.29372 3.34131 3.36809 3.49179 3.64391 3.81800 4.20903 4.40560 4.67708 4.93848 4.99649 5.01198 5.11919 5.20837 5.24806 5.33962 5.34070 5.48066 5.65154 5.99050 6.19972 6.71230 6.89877 7.30764 7.37794 7.69975 7.85139 8.13569 8.17609 8.74441 8.91149 9.49579 10.98084 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041773 B = 0.004053 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.130677 B = 6906.154420 C = 7021.358193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.142 3.858 4 C -0.002 4.002 5 N -0.462 5.462 6 C 0.100 3.900 7 C -0.265 4.265 8 C 0.578 3.422 9 O -0.521 6.521 10 N -0.591 5.591 11 C 0.071 3.929 12 C 0.247 3.753 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 S 0.217 5.783 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.188 0.812 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.299 -0.203 -1.692 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.062 3.938 4 C -0.276 4.276 5 N -0.178 5.178 6 C -0.057 4.057 7 C -0.390 4.390 8 C 0.363 3.637 9 O -0.400 6.400 10 N -0.323 5.323 11 C -0.076 4.076 12 C 0.128 3.872 13 C -0.571 4.571 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 S 0.474 5.526 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.204 0.796 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.052 -0.518 -1.431 21.107 hybrid contribution 0.816 1.155 -0.715 1.585 sum -20.236 0.637 -2.146 20.359 Atomic orbital electron populations 1.22794 0.80225 1.03218 1.00244 1.87974 1.20102 1.26517 1.95492 1.20750 0.85010 0.85820 1.02186 1.27324 1.00674 1.04732 0.94850 1.66176 1.04882 1.14668 1.32079 1.22092 0.90591 0.97303 0.95711 1.26309 0.98738 1.16120 0.97826 1.16742 0.85056 0.78799 0.83097 1.90826 1.45000 1.49386 1.54755 1.48081 1.10548 1.68291 1.05335 1.21898 0.89846 1.00517 0.95290 1.19411 0.74402 0.98136 0.95229 1.21374 0.97794 0.93835 1.44086 0.92367 1.24929 0.96833 0.97238 0.94947 1.69915 1.10500 1.29532 1.43245 0.86526 0.78269 0.83888 0.78570 1.20196 1.21099 1.20089 1.84340 0.95427 1.64073 1.08714 0.93733 0.93699 0.89212 0.90955 0.90404 0.79551 0.92472 0.88537 0.92306 0.94428 0.93348 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.22 10.69 -35.23 -0.38 -4.60 16 3 C 0.14 1.43 6.51 36.00 0.23 1.66 16 4 C 0.00 -0.03 7.02 -13.30 -0.09 -0.12 16 5 N -0.46 -7.29 10.51 -11.50 -0.12 -7.41 16 6 C 0.10 1.67 11.10 -18.85 -0.21 1.46 16 7 C -0.27 -4.65 6.25 -37.09 -0.23 -4.89 16 8 C 0.58 12.62 7.64 -12.85 -0.10 12.52 16 9 O -0.52 -13.41 16.45 5.19 0.09 -13.32 16 10 N -0.59 -12.64 2.86 -184.51 -0.53 -13.17 16 11 C 0.07 1.11 8.95 59.85 0.54 1.65 16 12 C 0.25 6.36 5.13 -5.19 -0.03 6.33 16 13 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 17 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 S 0.22 2.85 18.11 -107.50 -1.95 0.90 16 22 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 23 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.19 2.98 8.06 -52.49 -0.42 2.56 16 28 H 0.06 0.76 7.83 -51.93 -0.41 0.35 16 29 H 0.10 1.48 8.02 -51.93 -0.42 1.06 16 30 H 0.06 0.83 4.59 -23.53 -0.11 0.72 16 31 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.05 1.40 7.41 -51.93 -0.38 1.02 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -33.91 302.03 -5.63 -39.54 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -3.82 Total: -4.04 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 0.80 Total: 6.40 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.09 Total: -46.02 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.29 Total: -17.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.95 Total: 0.90 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.91 -5.63 -39.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285222854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.381 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds