Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00397 * 2 1 4 4 C 1.50692 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.29427 * 124.80906 * 90.02120 * 4 3 2 6 6 C 1.30946 * 117.37030 * 179.97438 * 5 4 3 7 7 C 1.35663 * 114.18495 * 0.02562 * 6 5 4 8 8 C 1.46684 * 126.12715 * 179.97438 * 7 6 5 9 9 O 1.21694 * 119.99975 * 351.66790 * 8 7 6 10 10 N 1.34770 * 120.00215 * 171.66747 * 8 7 6 11 11 C 1.46501 * 120.00074 * 0.48029 * 10 8 7 12 12 C 1.46505 * 120.00238 * 180.48119 * 10 8 7 13 13 C 1.50699 * 109.47099 * 89.99904 * 12 10 8 14 14 H 1.07995 * 120.00354 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99742 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00261 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00022 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47045 * 59.99768 * 17 15 13 19 19 H 1.48499 * 109.47537 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47141 * 300.00443 * 17 15 13 21 21 S 1.70959 * 124.80245 * 269.98125 * 4 3 2 22 22 H 1.09003 * 109.47425 * 300.00390 * 1 2 3 23 23 H 1.09004 * 109.46856 * 60.00057 * 1 2 3 24 24 H 1.08995 * 109.47202 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46908 * 59.99364 * 3 2 1 26 26 H 1.09005 * 109.46779 * 299.99719 * 3 2 1 27 27 H 1.07995 * 122.90277 * 179.73067 * 6 5 4 28 28 H 1.09006 * 109.47323 * 83.53029 * 11 10 8 29 29 H 1.08996 * 109.47393 * 203.53596 * 11 10 8 30 30 H 1.09004 * 109.46884 * 323.53340 * 11 10 8 31 31 H 1.08999 * 109.46946 * 210.00092 * 12 10 8 32 32 H 1.08996 * 109.46847 * 329.99589 * 12 10 8 33 33 H 0.96994 * 120.00235 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2495 1.1283 -1.0617 6 6 5.5438 1.0262 -0.8916 7 6 5.9329 0.9950 0.4076 8 6 7.3121 0.8856 0.8950 9 8 8.2175 0.6609 0.1135 10 7 7.5766 1.0340 2.2081 11 6 6.4853 1.2940 3.1503 12 6 8.9554 0.9352 2.6934 13 6 9.5957 2.2991 2.6681 14 1 9.0320 3.1541 2.3253 15 6 10.9010 2.4556 3.0837 16 7 11.5871 1.4147 3.5026 17 14 11.6947 4.1463 3.0531 18 1 10.9268 5.0694 3.9269 19 1 13.0919 4.0464 3.5460 20 1 11.6959 4.6674 1.6625 21 16 4.4846 1.1101 1.4048 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8901 27 1 6.2408 0.9670 -1.7145 28 1 6.0181 0.3511 3.4345 29 1 6.8817 1.7854 4.0388 30 1 5.7440 1.9391 2.6786 31 1 8.9547 0.5529 3.7142 32 1 9.5185 0.2573 2.0520 33 1 12.5055 1.5247 3.7946 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285222854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -48.525405 kcal Electronic energy + Delta-G solvation = -17968.275425 eV Core-core repulsion = 14927.816818 eV Total energy + Delta-G solvation = -3040.458607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23959 -40.26729 -38.70219 -36.78608 -34.83074 -32.67248 -30.38286 -29.17446 -27.69304 -27.00711 -25.55244 -24.54187 -22.20982 -20.00284 -19.46720 -18.72864 -17.73432 -17.60992 -17.40594 -16.67429 -16.51312 -16.44709 -15.91090 -15.46994 -15.08397 -14.65035 -14.26929 -14.06570 -13.77323 -13.66749 -13.32084 -13.20847 -12.98487 -12.59616 -12.54290 -12.34729 -12.21352 -11.79914 -11.10700 -10.78928 -10.66189 -10.58631 -10.49830 -10.10173 -9.52952 -8.24639 -6.39667 -0.88523 0.09113 0.52835 1.30932 1.38007 1.41965 1.49378 2.04198 2.18269 2.39891 2.69929 3.05743 3.30317 3.56066 3.86172 4.04923 4.18079 4.27902 4.40269 4.43549 4.56653 4.62797 4.72770 4.91205 4.92329 4.98514 5.17097 5.44310 5.73077 6.00437 6.09283 6.43231 6.56345 6.67727 7.10538 7.32226 8.82736 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041773 B = 0.004053 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.130677 B = 6906.154420 C = 7021.358193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.137 3.863 4 C 0.006 3.994 5 N -0.486 5.486 6 C 0.107 3.893 7 C -0.310 4.310 8 C 0.574 3.426 9 O -0.580 6.580 10 N -0.598 5.598 11 C 0.064 3.936 12 C 0.261 3.739 13 C -0.549 4.549 14 H 0.054 0.946 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.278 1.278 20 H -0.279 1.279 21 S 0.297 5.703 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.181 0.819 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.004 0.996 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.146 1.177 -0.658 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.058 3.942 4 C -0.267 4.267 5 N -0.202 5.202 6 C -0.051 4.051 7 C -0.435 4.435 8 C 0.361 3.639 9 O -0.462 6.462 10 N -0.328 5.328 11 C -0.080 4.080 12 C 0.140 3.860 13 C -0.588 4.588 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.205 1.205 21 S 0.555 5.445 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.198 0.802 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.969 0.868 -0.347 23.987 hybrid contribution 1.516 0.670 -1.041 1.958 sum -22.453 1.538 -1.388 22.548 Atomic orbital electron populations 1.23020 0.78007 1.04262 1.01732 1.87919 1.22497 1.26880 1.95817 1.21026 0.82438 0.86175 1.04547 1.28123 1.02545 1.01487 0.94580 1.66285 1.04263 1.16492 1.33143 1.22124 0.91291 0.96185 0.95544 1.25834 0.98471 1.19786 0.99393 1.17248 0.86454 0.77524 0.82657 1.90771 1.47403 1.51900 1.56108 1.48035 1.10252 1.68204 1.06336 1.22211 0.88727 1.02649 0.94451 1.18916 0.76650 0.96397 0.94037 1.21647 0.98480 0.94459 1.44173 0.92757 1.25831 0.97343 1.01289 0.94351 1.70030 1.10911 1.31710 1.43854 0.85466 0.77673 0.79193 0.78482 1.18255 1.20261 1.20501 1.83806 0.91722 1.62343 1.06580 0.91712 0.92707 0.88522 0.87389 0.89278 0.80211 0.89487 0.87978 0.90286 0.94474 0.97815 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.75 10.69 -148.98 -1.59 -9.34 16 3 C 0.14 2.24 6.51 71.23 0.46 2.70 16 4 C 0.01 0.14 7.02 88.46 0.62 0.76 16 5 N -0.49 -14.70 10.51 -190.31 -2.00 -16.70 16 6 C 0.11 3.62 11.10 84.23 0.94 4.55 16 7 C -0.31 -10.84 6.25 23.88 0.15 -10.69 16 8 C 0.57 25.89 7.64 86.45 0.66 26.55 16 9 O -0.58 -31.70 16.45 -4.33 -0.07 -31.78 16 10 N -0.60 -26.01 2.86 -855.88 -2.45 -28.46 16 11 C 0.06 1.89 8.95 127.77 1.14 3.03 16 12 C 0.26 13.96 5.13 85.63 0.44 14.40 16 13 C -0.55 -31.42 9.39 25.60 0.24 -31.18 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.65 5.46 84.65 0.46 1.11 16 16 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 17 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 S 0.30 6.93 18.11 -56.49 -1.02 5.91 16 22 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.18 6.06 8.06 -2.91 -0.02 6.04 16 28 H 0.09 2.08 7.83 -2.38 -0.02 2.06 16 29 H 0.10 2.95 8.02 -2.39 -0.02 2.93 16 30 H 0.08 2.01 4.59 -20.44 -0.09 1.91 16 31 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 32 H 0.00 0.23 7.41 -2.39 -0.02 0.21 16 33 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -76.64 302.03 2.58 -74.05 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.04 Total: 2.15 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.36 Total: 12.75 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -4.16 Total: -100.19 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.66 Total: -41.12 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -1.02 Total: 5.91 kcal Total: -76.64 2.58 -74.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285222854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.528 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds