Wall clock time and date at job start Mon Mar 30 2020 01:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47060 * 2 1 4 4 C 1.34800 * 116.99766 * 180.02562 * 3 2 1 5 5 O 1.21556 * 120.00257 * 359.97438 * 4 3 2 6 6 C 1.47111 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.35286 * 123.15825 * 179.72841 * 6 4 3 8 8 S 1.70948 * 108.82111 * 179.87091 * 7 6 4 9 9 C 1.70760 * 91.13587 * 0.32978 * 8 7 6 10 10 C 1.50707 * 124.70912 * 179.82810 * 9 8 7 11 11 N 1.46502 * 109.46818 * 269.97558 * 10 9 8 12 12 C 1.46492 * 119.99955 * 269.99709 * 11 10 9 13 13 C 1.36944 * 119.99777 * 89.99949 * 11 10 9 14 14 H 1.07993 * 119.99821 * 22.35471 * 13 11 10 15 15 C 1.38814 * 119.99734 * 202.35303 * 13 11 10 16 16 N 1.31624 * 120.00083 * 11.34019 * 15 13 11 17 17 Si 1.86794 * 119.99783 * 191.33883 * 15 13 11 18 18 H 1.48497 * 109.47241 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46855 * 120.00037 * 17 15 13 20 20 H 1.48497 * 109.47368 * 239.99641 * 17 15 13 21 21 N 1.28627 * 110.58499 * 359.80891 * 9 8 7 22 22 H 1.09005 * 109.47281 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47461 * 300.00255 * 1 2 3 24 24 H 1.09007 * 109.47070 * 60.00385 * 1 2 3 25 25 H 1.09000 * 109.47461 * 239.99745 * 2 1 3 26 26 H 1.08998 * 109.47182 * 119.99919 * 2 1 3 27 27 H 1.08000 * 125.59178 * 359.97438 * 7 6 4 28 28 H 1.08998 * 109.46692 * 29.96947 * 10 9 8 29 29 H 1.08995 * 109.47214 * 149.97807 * 10 9 8 30 30 H 1.08993 * 109.47440 * 94.21771 * 12 11 10 31 31 H 1.09006 * 109.47346 * 214.21826 * 12 11 10 32 32 H 1.08998 * 109.47565 * 334.21164 * 12 11 10 33 33 H 0.96996 * 119.99602 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5455 -0.0005 5 8 4.0909 0.5815 -0.0005 6 6 3.9127 2.9049 -0.0011 7 6 5.2421 3.1557 0.0037 8 16 5.4841 4.8480 -0.0026 9 6 3.7988 5.1232 -0.0014 10 6 3.1515 6.4842 -0.0016 11 7 2.9423 6.9256 1.3795 12 6 1.6921 6.6014 2.0707 13 6 3.9156 7.6413 2.0244 14 1 4.6528 8.1863 1.4536 15 6 3.9546 7.6661 3.4118 16 7 3.2070 6.8346 4.1062 17 14 5.0680 8.8796 4.2932 18 1 5.7990 9.6977 3.2925 19 1 4.2476 9.7686 5.1545 20 1 6.0420 8.1377 5.1335 21 7 3.1584 4.0076 -0.0007 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 6.0226 2.4093 0.0088 28 1 3.7991 7.1943 -0.5159 29 1 2.1916 6.4298 -0.5150 30 1 1.8218 5.6845 2.6455 31 1 1.4265 7.4173 2.7431 32 1 0.8974 6.4615 1.3379 33 1 3.2340 6.8523 5.0756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292507031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:48 Heat of formation + Delta-G solvation = -19.993168 kcal Electronic energy + Delta-G solvation = -18266.920228 eV Core-core repulsion = 15227.698872 eV Total energy + Delta-G solvation = -3039.221356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37594 -38.77499 -36.41796 -35.68510 -32.01292 -31.61870 -30.07403 -27.07640 -25.98765 -25.59792 -22.99162 -22.07247 -20.66541 -19.41378 -18.49520 -16.86612 -16.66200 -16.43952 -15.94808 -15.11170 -14.60081 -14.26856 -13.84433 -13.57334 -13.23069 -13.11967 -12.83302 -12.79044 -11.87735 -11.76613 -11.59783 -11.44018 -11.31358 -11.00627 -10.78733 -10.48673 -10.46519 -10.44631 -10.13853 -10.08516 -9.20897 -9.07331 -8.73789 -8.42805 -7.03607 -5.94390 -3.37765 0.91177 1.80042 2.15694 2.24934 2.98329 3.27688 3.34820 3.36898 3.57649 4.33943 4.50235 4.91899 4.96950 5.16314 5.23809 5.29248 5.47386 5.52568 5.64700 5.74488 5.76058 5.96705 6.09970 6.33431 6.45392 6.54677 6.74719 7.28840 7.60278 7.70608 7.79188 8.15718 8.25205 8.99572 9.60051 10.09067 11.08054 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.005318 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.702461 B = 5263.734877 C = 5764.260583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.333 6.333 4 C 0.554 3.446 5 O -0.515 6.515 6 C 0.022 3.978 7 C -0.254 4.254 8 S 0.209 5.791 9 C 0.043 3.957 10 C 0.211 3.789 11 N -0.574 5.574 12 C 0.161 3.839 13 C -0.263 4.263 14 H 0.077 0.923 15 C 0.009 3.991 16 N -0.891 5.891 17 Si 0.909 3.091 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.288 1.288 21 N -0.444 5.444 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.178 0.822 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 -7.154 -8.816 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.249 6.249 4 C 0.396 3.604 5 O -0.405 6.405 6 C -0.114 4.114 7 C -0.398 4.398 8 S 0.468 5.532 9 C -0.241 4.241 10 C 0.079 3.921 11 N -0.293 5.293 12 C 0.017 3.983 13 C -0.393 4.393 14 H 0.095 0.905 15 C -0.192 4.192 16 N -0.533 5.533 17 Si 0.738 3.262 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.214 1.214 21 N -0.160 5.160 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.195 0.805 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.359 -6.769 -8.601 10.951 hybrid contribution 0.361 -0.885 0.960 1.355 sum 0.002 -7.654 -7.641 10.815 Atomic orbital electron populations 1.21787 0.92565 1.02596 1.03888 1.23035 0.95539 0.80523 1.02313 1.86733 1.23233 1.31418 1.83527 1.20012 0.80615 0.87853 0.71886 1.90821 1.60767 1.41541 1.47355 1.19159 0.89186 0.91455 1.11554 1.26405 0.99997 1.03261 1.10096 1.82917 1.11691 0.95478 1.63079 1.29733 0.93283 1.00813 1.00238 1.19973 0.98163 0.84682 0.89322 1.44428 1.15930 1.58367 1.10600 1.20900 0.83666 1.00386 0.93354 1.19408 1.09388 1.21307 0.89222 0.90501 1.25193 0.98766 0.98256 0.96966 1.70114 1.41102 1.35971 1.06140 0.86116 0.79965 0.80413 0.79701 1.19838 1.21272 1.21425 1.66975 1.36367 0.96570 1.16084 0.90445 0.91224 0.91405 0.91412 0.91341 0.80479 0.90995 0.90611 0.95006 0.93113 0.97531 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.78 6.20 37.16 0.23 1.01 16 3 O -0.33 -5.86 10.16 -40.76 -0.41 -6.27 16 4 C 0.55 10.51 7.94 34.33 0.27 10.78 16 5 O -0.52 -9.96 16.51 -19.31 -0.32 -10.28 16 6 C 0.02 0.43 6.71 -84.55 -0.57 -0.14 16 7 C -0.25 -4.46 10.62 29.68 0.32 -4.15 16 8 S 0.21 3.59 22.92 -107.50 -2.46 1.13 16 9 C 0.04 0.85 6.92 -13.62 -0.09 0.76 16 10 C 0.21 4.15 6.28 -5.19 -0.03 4.11 16 11 N -0.57 -13.72 2.91 -182.51 -0.53 -14.25 16 12 C 0.16 3.92 9.01 59.84 0.54 4.46 16 13 C -0.26 -6.67 9.67 -15.06 -0.15 -6.82 16 14 H 0.08 1.86 7.84 -52.49 -0.41 1.45 16 15 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 16 N -0.89 -25.04 10.59 55.49 0.59 -24.45 16 17 Si 0.91 20.65 29.57 -169.99 -5.03 15.62 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 N -0.44 -9.36 10.60 -8.53 -0.09 -9.45 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.18 2.71 8.03 -52.49 -0.42 2.29 16 28 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 29 H 0.08 1.38 7.86 -51.93 -0.41 0.98 16 30 H 0.03 0.86 7.42 -51.93 -0.39 0.48 16 31 H 0.05 1.30 7.19 -51.93 -0.37 0.92 16 32 H 0.01 0.13 7.84 -51.93 -0.41 -0.27 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -30.49 306.55 -6.90 -37.39 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -4.07 Total: -3.09 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 0.81 Total: 9.04 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.03 Total: -48.15 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.73 Total: -16.56 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -2.46 Total: 1.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.49 -6.90 -37.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292507031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.392 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds