Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53765 * 113.19135 * 2 1 4 4 C 1.54867 * 100.61690 * 90.12452 * 3 2 1 5 5 C 1.51127 * 104.38980 * 25.57810 * 4 3 2 6 6 O 1.21278 * 124.73203 * 171.11411 * 5 4 3 7 7 N 1.35831 * 110.52856 * 351.10532 * 5 4 3 8 8 C 1.46721 * 138.90705 * 164.45712 * 7 5 4 9 9 H 1.09002 * 108.66089 * 314.04622 * 8 7 5 10 10 C 1.50697 * 108.65916 * 72.03162 * 8 7 5 11 11 O 1.21294 * 120.00032 * 2.67460 * 10 8 7 12 12 N 1.34782 * 120.00149 * 182.67145 * 10 8 7 13 13 C 1.37088 * 120.00100 * 180.02562 * 12 10 8 14 14 H 1.08010 * 120.00208 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00334 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00478 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99534 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47194 * 90.00055 * 17 15 13 19 19 H 1.48498 * 109.47046 * 209.99950 * 17 15 13 20 20 H 1.48500 * 109.47235 * 329.99980 * 17 15 13 21 21 C 1.54409 * 113.50583 * 193.03728 * 8 7 5 22 22 S 1.83571 * 112.73971 * 233.98220 * 2 1 3 23 23 H 1.09003 * 109.46940 * 301.18412 * 1 2 3 24 24 H 1.08995 * 109.46842 * 61.17700 * 1 2 3 25 25 H 1.08996 * 109.47491 * 181.17915 * 1 2 3 26 26 H 1.09003 * 111.18397 * 207.95931 * 3 2 1 27 27 H 1.08998 * 111.18781 * 332.23373 * 3 2 1 28 28 H 1.09001 * 110.44954 * 144.30532 * 4 3 2 29 29 H 1.08998 * 110.44537 * 266.72572 * 4 3 2 30 30 H 0.96994 * 119.99628 * 359.97438 * 12 10 8 31 31 H 0.96999 * 119.99865 * 179.97438 * 16 15 13 32 32 H 1.09006 * 110.99318 * 135.77114 * 21 8 7 33 33 H 1.09001 * 110.99700 * 259.59212 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1356 1.4134 0.0000 4 6 2.2510 1.6744 1.5222 5 6 2.3493 0.2956 2.1332 6 8 2.6069 0.0724 3.2971 7 7 2.1087 -0.6586 1.1969 8 6 2.2909 -2.1035 1.0185 9 1 3.3000 -2.3693 1.3334 10 6 1.3062 -2.8262 1.9010 11 8 0.5079 -2.1960 2.5621 12 7 1.3123 -4.1729 1.9559 13 6 0.4162 -4.8304 2.7583 14 1 -0.2946 -4.2693 3.3470 15 6 0.4222 -6.2187 2.8144 16 7 -0.4365 -6.8490 3.5840 17 14 1.6510 -7.1893 1.7958 18 1 2.8914 -7.3998 2.5848 19 1 1.0649 -8.5051 1.4346 20 1 1.9736 -6.4347 0.5582 21 6 2.0875 -2.5746 -0.4378 22 16 2.2396 -0.9956 -1.3694 23 1 -0.3633 0.5321 0.8792 24 1 -0.3633 0.4954 -0.9003 25 1 -0.3634 -1.0274 0.0211 26 1 3.1159 1.4219 -0.4765 27 1 1.4641 2.1297 -0.4735 28 1 3.1479 2.2534 1.7424 29 1 1.3646 2.1928 1.8879 30 1 1.9504 -4.6768 1.4269 31 1 -0.4325 -7.8182 3.6229 32 1 2.8669 -3.2771 -0.7335 33 1 1.0983 -3.0121 -0.5722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299531142.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -43.596560 kcal Electronic energy + Delta-G solvation = -19324.520461 eV Core-core repulsion = 16284.275585 eV Total energy + Delta-G solvation = -3040.244876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55403 -38.41209 -36.71511 -34.17778 -33.78512 -31.74428 -30.27489 -29.60894 -25.62749 -25.48514 -23.73698 -21.39390 -20.12817 -19.12123 -18.39647 -17.15830 -16.60882 -15.90150 -15.56334 -15.10242 -14.70195 -14.41514 -14.00255 -13.66779 -13.52825 -13.25503 -13.00369 -12.85883 -12.67244 -12.48915 -12.31526 -12.10676 -11.59806 -11.27300 -11.15015 -11.09420 -10.68534 -10.47928 -10.05137 -9.71641 -9.66552 -9.04012 -8.30477 -8.27613 -7.94585 -6.38716 -3.90727 1.55417 1.91005 2.66427 2.77234 2.94425 3.01428 3.10049 3.48375 4.02794 4.10196 4.23204 4.40446 4.57631 4.66580 4.80943 4.92516 5.18923 5.21587 5.33514 5.41181 5.48195 5.61125 5.65523 5.71818 5.74865 5.77244 6.21406 6.29059 7.25542 7.46871 8.02563 8.25772 8.49506 8.85392 9.31192 9.67884 10.73972 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.006482 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.379699 B = 4318.626826 C = 4813.636128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.179 3.821 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.545 3.455 6 O -0.506 6.506 7 N -0.597 5.597 8 C 0.141 3.859 9 H 0.101 0.899 10 C 0.436 3.564 11 O -0.551 6.551 12 N -0.582 5.582 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.044 3.956 16 N -0.876 5.876 17 Si 0.878 3.122 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.269 1.269 21 C -0.067 4.067 22 S -0.271 6.271 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.370 0.630 31 H 0.275 0.725 32 H 0.124 0.876 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.710 12.869 -12.599 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 C -0.147 4.147 4 C -0.180 4.180 5 C 0.333 3.667 6 O -0.379 6.379 7 N -0.334 5.334 8 C 0.033 3.967 9 H 0.119 0.881 10 C 0.219 3.781 11 O -0.431 6.431 12 N -0.222 5.222 13 C -0.435 4.435 14 H 0.138 0.862 15 C -0.159 4.159 16 N -0.515 5.515 17 Si 0.704 3.296 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.194 1.194 21 C -0.216 4.216 22 S -0.041 6.041 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.203 0.797 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.724 13.124 -12.431 19.287 hybrid contribution 0.415 -1.547 0.314 1.632 sum 7.138 11.577 -12.117 18.216 Atomic orbital electron populations 1.22071 0.90428 1.04359 1.02783 1.24288 0.96916 0.95174 0.85368 1.22565 1.02747 0.93203 0.96175 1.22362 1.05803 0.94803 0.95079 1.20916 0.75386 0.85967 0.84444 1.90743 1.47334 1.84142 1.15637 1.49256 1.62990 1.04885 1.16301 1.21013 1.01158 0.80011 0.94561 0.88084 1.19866 0.88151 0.82832 0.87274 1.90597 1.40883 1.65798 1.45858 1.42185 1.33259 1.05084 1.41633 1.19425 1.12740 0.90050 1.21248 0.86224 1.25042 0.97334 0.96282 0.97285 1.69618 1.35147 1.09251 1.37529 0.86703 0.81796 0.80810 0.80300 1.19453 1.19965 1.19428 1.24632 1.07743 0.97222 0.92018 1.87980 1.82857 1.06356 1.26938 0.90820 0.90587 0.90931 0.88670 0.88469 0.87300 0.87285 0.79715 0.91452 0.85819 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.35 37.16 0.35 -1.41 16 2 C 0.18 2.31 0.87 -66.50 -0.06 2.25 16 3 C -0.11 -1.00 6.35 -25.35 -0.16 -1.16 16 4 C -0.14 -1.48 6.81 -26.69 -0.18 -1.66 16 5 C 0.55 9.38 8.23 -10.30 -0.08 9.29 16 6 O -0.51 -11.21 18.03 5.56 0.10 -11.11 16 7 N -0.60 -9.91 2.37 -152.27 -0.36 -10.27 16 8 C 0.14 2.43 3.61 -68.22 -0.25 2.18 16 9 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 10 C 0.44 9.93 6.94 -10.98 -0.08 9.85 16 11 O -0.55 -14.99 15.85 5.55 0.09 -14.90 16 12 N -0.58 -13.62 4.97 -10.96 -0.05 -13.68 16 13 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 14 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 15 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 16 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 17 Si 0.88 18.92 27.74 -169.99 -4.71 14.20 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 20 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 21 C -0.07 -0.92 6.75 37.90 0.26 -0.66 16 22 S -0.27 -3.41 22.29 -107.50 -2.40 -5.80 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 27 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.37 7.49 5.60 -40.82 -0.23 7.26 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 32 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.11 1.59 7.78 -51.93 -0.40 1.19 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -35.32 292.47 -6.58 -41.90 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.97 Total: 8.77 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.45 Total: 11.05 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.36 Total: -48.52 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: 0.19 Total: -26.01 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.20 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.40 Total: -5.80 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.32 -6.58 -41.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299531142.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.700 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds