Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53765 * 113.19135 * 2 1 4 4 C 1.54867 * 100.61690 * 90.12452 * 3 2 1 5 5 C 1.51127 * 104.38980 * 25.57810 * 4 3 2 6 6 O 1.21278 * 124.73203 * 171.11411 * 5 4 3 7 7 N 1.35831 * 110.52856 * 351.10532 * 5 4 3 8 8 C 1.46721 * 138.90705 * 164.45712 * 7 5 4 9 9 H 1.09002 * 108.66089 * 314.04622 * 8 7 5 10 10 C 1.50697 * 108.65916 * 72.03162 * 8 7 5 11 11 O 1.21294 * 120.00032 * 2.67460 * 10 8 7 12 12 N 1.34782 * 120.00149 * 182.67145 * 10 8 7 13 13 C 1.37088 * 120.00100 * 180.02562 * 12 10 8 14 14 H 1.08010 * 120.00208 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00334 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00478 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99534 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47194 * 90.00055 * 17 15 13 19 19 H 1.48498 * 109.47046 * 209.99950 * 17 15 13 20 20 H 1.48500 * 109.47235 * 329.99980 * 17 15 13 21 21 C 1.54409 * 113.50583 * 193.03728 * 8 7 5 22 22 S 1.83571 * 112.73971 * 233.98220 * 2 1 3 23 23 H 1.09003 * 109.46940 * 301.18412 * 1 2 3 24 24 H 1.08995 * 109.46842 * 61.17700 * 1 2 3 25 25 H 1.08996 * 109.47491 * 181.17915 * 1 2 3 26 26 H 1.09003 * 111.18397 * 207.95931 * 3 2 1 27 27 H 1.08998 * 111.18781 * 332.23373 * 3 2 1 28 28 H 1.09001 * 110.44954 * 144.30532 * 4 3 2 29 29 H 1.08998 * 110.44537 * 266.72572 * 4 3 2 30 30 H 0.96994 * 119.99628 * 359.97438 * 12 10 8 31 31 H 0.96999 * 119.99865 * 179.97438 * 16 15 13 32 32 H 1.09006 * 110.99318 * 135.77114 * 21 8 7 33 33 H 1.09001 * 110.99700 * 259.59212 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1356 1.4134 0.0000 4 6 2.2510 1.6744 1.5222 5 6 2.3493 0.2956 2.1332 6 8 2.6069 0.0724 3.2971 7 7 2.1087 -0.6586 1.1969 8 6 2.2909 -2.1035 1.0185 9 1 3.3000 -2.3693 1.3334 10 6 1.3062 -2.8262 1.9010 11 8 0.5079 -2.1960 2.5621 12 7 1.3123 -4.1729 1.9559 13 6 0.4162 -4.8304 2.7583 14 1 -0.2946 -4.2693 3.3470 15 6 0.4222 -6.2187 2.8144 16 7 -0.4365 -6.8490 3.5840 17 14 1.6510 -7.1893 1.7958 18 1 2.8914 -7.3998 2.5848 19 1 1.0649 -8.5051 1.4346 20 1 1.9736 -6.4347 0.5582 21 6 2.0875 -2.5746 -0.4378 22 16 2.2396 -0.9956 -1.3694 23 1 -0.3633 0.5321 0.8792 24 1 -0.3633 0.4954 -0.9003 25 1 -0.3634 -1.0274 0.0211 26 1 3.1159 1.4219 -0.4765 27 1 1.4641 2.1297 -0.4735 28 1 3.1479 2.2534 1.7424 29 1 1.3646 2.1928 1.8879 30 1 1.9504 -4.6768 1.4269 31 1 -0.4325 -7.8182 3.6229 32 1 2.8669 -3.2771 -0.7335 33 1 1.0983 -3.0121 -0.5722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299531142.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -70.953247 kcal Electronic energy + Delta-G solvation = -19325.706736 eV Core-core repulsion = 16284.275585 eV Total energy + Delta-G solvation = -3041.431151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81658 -40.17615 -38.08999 -36.14937 -35.13545 -33.76821 -31.38723 -30.72527 -27.44126 -26.48031 -25.25480 -22.41958 -21.77175 -20.93375 -19.92700 -18.40422 -18.22755 -17.04874 -16.98974 -16.82902 -16.06176 -15.73175 -15.40896 -15.11029 -14.93330 -14.66499 -14.41213 -14.22860 -14.13917 -13.64743 -13.60300 -13.29953 -13.04867 -12.71147 -12.47693 -12.23123 -12.00467 -11.96147 -11.63380 -11.56613 -11.06564 -10.61560 -10.34660 -9.85606 -8.90606 -8.48426 -6.11055 0.54178 0.83930 1.24418 1.30926 1.36334 1.41448 1.57603 1.76836 2.17780 2.74482 2.94274 3.12973 3.27816 3.51962 3.68717 3.78467 3.95990 4.02107 4.31886 4.33983 4.40638 4.57452 4.62441 4.77588 4.96327 5.00525 5.11243 5.18374 5.45054 5.82887 6.02462 6.47195 6.76063 6.97738 7.25339 7.79468 8.68972 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.006482 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.379699 B = 4318.626826 C = 4813.636128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.164 3.836 3 C -0.091 4.091 4 C -0.126 4.126 5 C 0.526 3.474 6 O -0.574 6.574 7 N -0.610 5.610 8 C 0.144 3.856 9 H 0.116 0.884 10 C 0.434 3.566 11 O -0.605 6.605 12 N -0.578 5.578 13 C -0.332 4.332 14 H 0.051 0.949 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.222 1.222 21 C -0.071 4.071 22 S -0.229 6.229 23 H 0.062 0.938 24 H 0.112 0.888 25 H 0.035 0.965 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.125 0.875 30 H 0.390 0.610 31 H 0.281 0.719 32 H 0.161 0.839 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.271 13.902 -16.568 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 C -0.130 4.130 4 C -0.167 4.167 5 C 0.317 3.683 6 O -0.451 6.451 7 N -0.347 5.347 8 C 0.036 3.964 9 H 0.134 0.866 10 C 0.220 3.780 11 O -0.489 6.489 12 N -0.220 5.220 13 C -0.461 4.461 14 H 0.069 0.931 15 C -0.210 4.210 16 N -0.569 5.569 17 Si 0.779 3.221 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.144 1.144 21 C -0.220 4.220 22 S 0.001 5.999 23 H 0.081 0.919 24 H 0.131 0.869 25 H 0.054 0.946 26 H 0.129 0.871 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.143 0.857 30 H 0.226 0.774 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.286 14.186 -16.468 23.636 hybrid contribution -0.506 -1.799 1.625 2.477 sum 8.780 12.387 -14.843 21.233 Atomic orbital electron populations 1.22070 0.90950 1.02272 1.04104 1.24638 0.96790 0.97466 0.84274 1.22680 1.04137 0.91070 0.95121 1.22456 1.07853 0.90698 0.95651 1.22322 0.73683 0.88452 0.83805 1.90696 1.50367 1.85529 1.18524 1.49558 1.62570 1.04700 1.17840 1.21067 0.99370 0.80381 0.95630 0.86587 1.21096 0.87880 0.82560 0.86511 1.90568 1.43319 1.67000 1.47995 1.41946 1.33015 1.05523 1.41490 1.18954 1.13661 0.90728 1.22768 0.93073 1.26151 0.99659 0.96833 0.98380 1.69800 1.37583 1.10061 1.39504 0.85440 0.78090 0.78756 0.79794 1.18368 1.19491 1.14449 1.24635 1.08576 0.99047 0.89747 1.87826 1.82372 1.04260 1.25417 0.91906 0.86949 0.94620 0.87100 0.84763 0.84522 0.85738 0.77359 0.90909 0.82155 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.35 71.98 0.67 -2.61 16 2 C 0.16 3.79 0.87 44.89 0.04 3.83 16 3 C -0.09 -1.27 6.35 31.49 0.20 -1.07 16 4 C -0.13 -2.32 6.81 30.62 0.21 -2.11 16 5 C 0.53 18.03 8.23 87.63 0.72 18.75 16 6 O -0.57 -26.48 18.03 -3.02 -0.05 -26.53 16 7 N -0.61 -19.78 2.37 -753.47 -1.79 -21.56 16 8 C 0.14 4.85 3.61 44.68 0.16 5.01 16 9 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 10 C 0.43 20.53 6.94 87.66 0.61 21.14 16 11 O -0.61 -35.34 15.85 -3.07 -0.05 -35.39 16 12 N -0.58 -27.65 4.97 -306.98 -1.53 -29.18 16 13 C -0.33 -19.74 10.16 84.04 0.85 -18.88 16 14 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 16 N -0.93 -56.28 13.96 21.66 0.30 -55.98 16 17 Si 0.96 38.08 27.74 68.60 1.90 39.98 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.22 -7.06 6.52 99.48 0.65 -6.41 16 21 C -0.07 -1.76 6.75 72.46 0.49 -1.27 16 22 S -0.23 -4.85 22.29 -56.49 -1.26 -6.11 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.28 7.87 -2.39 -0.02 1.26 16 27 H 0.13 0.97 8.03 -2.39 -0.02 0.95 16 28 H 0.14 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.39 15.16 5.60 -92.71 -0.52 14.64 16 31 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.16 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.10 2.69 7.78 -2.39 -0.02 2.68 16 Total: -1.00 -87.60 292.47 2.51 -85.09 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.56 Total: 27.03 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 4.42 Total: 22.64 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.01 Total: -106.72 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -0.10 Total: -61.92 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.90 Total: 39.98 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -1.26 Total: -6.11 kcal Total: -87.60 2.51 -85.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299531142.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.137 kcal (2) G-P(sol) polarization free energy of solvation -87.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds