Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53766 * 112.67314 * 2 1 4 4 C 1.54858 * 100.61434 * 90.51865 * 3 2 1 5 5 C 1.51130 * 104.39223 * 25.58255 * 4 3 2 6 6 O 1.21281 * 124.73757 * 171.10603 * 5 4 3 7 7 N 1.37044 * 110.68364 * 350.42734 * 5 4 3 8 8 C 1.46722 * 139.13526 * 164.37416 * 7 5 4 9 9 H 1.09002 * 108.66032 * 73.02862 * 8 7 5 10 10 C 1.50697 * 108.65733 * 315.04456 * 8 7 5 11 11 O 1.21298 * 120.00119 * 357.32478 * 10 8 7 12 12 N 1.34776 * 120.00251 * 177.32575 * 10 8 7 13 13 C 1.37097 * 120.00160 * 179.97438 * 12 10 8 14 14 H 1.08000 * 120.00023 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00130 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99610 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00098 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47135 * 59.99992 * 17 15 13 19 19 H 1.48501 * 109.47180 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47416 * 299.99825 * 17 15 13 21 21 C 1.54409 * 113.51328 * 194.03788 * 8 7 5 22 22 S 1.83566 * 112.74196 * 234.40902 * 2 1 3 23 23 H 1.09000 * 109.47386 * 184.57400 * 1 2 3 24 24 H 1.08995 * 109.47369 * 304.57657 * 1 2 3 25 25 H 1.09001 * 109.46751 * 64.57819 * 1 2 3 26 26 H 1.08990 * 111.18838 * 208.36344 * 3 2 1 27 27 H 1.09001 * 111.18184 * 332.68294 * 3 2 1 28 28 H 1.08998 * 110.44919 * 144.30749 * 4 3 2 29 29 H 1.08997 * 110.45689 * 266.73192 * 4 3 2 30 30 H 0.97001 * 119.99662 * 0.02562 * 12 10 8 31 31 H 0.97001 * 119.99589 * 180.02562 * 16 15 13 32 32 H 1.09001 * 110.99622 * 135.94274 * 21 8 7 33 33 H 1.08996 * 110.99705 * 259.74114 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1228 1.4188 0.0000 4 6 2.2454 1.6767 1.5220 5 6 2.3602 0.2973 2.1287 6 8 2.6274 0.0733 3.2903 7 7 2.1060 -0.6674 1.1891 8 6 2.2911 -2.1109 1.0028 9 1 1.5811 -2.6386 1.6396 10 6 3.6878 -2.4775 1.4338 11 8 4.4548 -1.6137 1.8036 12 7 4.0848 -3.7652 1.4083 13 6 5.3557 -4.0987 1.7999 14 1 6.0388 -3.3294 2.1284 15 6 5.7651 -5.4262 1.7731 16 7 4.9340 -6.3621 1.3729 17 14 7.4969 -5.8804 2.3060 18 1 7.7041 -5.4694 3.7179 19 1 7.6826 -7.3488 2.1861 20 1 8.4805 -5.1841 1.4384 21 6 2.0863 -2.5751 -0.4556 22 16 2.2397 -0.9853 -1.3767 23 1 -0.3634 -1.0244 0.0820 24 1 -0.3634 0.5832 0.8461 25 1 -0.3633 0.4412 -0.9282 26 1 3.0997 1.4376 -0.4828 27 1 1.4414 2.1303 -0.4664 28 1 3.1384 2.2633 1.7381 29 1 1.3569 2.1860 1.8949 30 1 3.4716 -4.4560 1.1122 31 1 5.2197 -7.2889 1.3546 32 1 2.8650 -3.2766 -0.7552 33 1 1.0969 -3.0117 -0.5912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299531145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -49.461230 kcal Electronic energy + Delta-G solvation = -19240.276573 eV Core-core repulsion = 16199.777386 eV Total energy + Delta-G solvation = -3040.499187 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.35206 -38.17360 -36.62745 -34.09649 -33.62630 -31.29960 -30.26094 -29.37843 -25.48306 -25.39159 -23.79738 -21.27387 -20.22492 -18.61743 -17.96533 -17.24403 -16.35854 -15.93194 -15.35219 -14.82756 -14.51878 -14.18848 -14.07337 -13.74388 -13.57385 -13.21366 -13.08872 -12.71962 -12.48689 -12.38780 -12.05087 -11.88120 -11.53753 -11.09099 -11.05351 -10.94502 -10.45895 -10.26069 -10.19035 -9.54672 -9.54287 -8.92496 -8.19864 -8.03021 -7.70793 -6.46493 -3.87274 1.69255 2.09411 2.69980 3.03167 3.17981 3.24525 3.29758 3.70448 4.09902 4.21679 4.35818 4.59457 4.72512 4.74663 4.92585 5.15882 5.21843 5.29704 5.37454 5.47462 5.55971 5.60098 5.72720 5.77977 5.83918 5.96222 6.05523 6.48595 7.37480 7.51555 7.97675 8.38701 8.54594 9.12048 9.43785 9.94596 10.70834 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028761 B = 0.006002 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.298816 B = 4664.103301 C = 5171.218534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.553 3.447 6 O -0.501 6.501 7 N -0.604 5.604 8 C 0.144 3.856 9 H 0.094 0.906 10 C 0.434 3.566 11 O -0.566 6.566 12 N -0.557 5.557 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.025 3.975 16 N -0.901 5.901 17 Si 0.932 3.068 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 C -0.065 4.065 22 S -0.266 6.266 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.392 0.608 31 H 0.273 0.727 32 H 0.127 0.873 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 10.603 -6.225 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.147 4.147 4 C -0.180 4.180 5 C 0.341 3.659 6 O -0.373 6.373 7 N -0.344 5.344 8 C 0.036 3.964 9 H 0.112 0.888 10 C 0.217 3.783 11 O -0.449 6.449 12 N -0.194 5.194 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.177 4.177 16 N -0.542 5.542 17 Si 0.759 3.241 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.214 4.214 22 S -0.037 6.037 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.225 0.775 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.049 11.004 -6.341 16.195 hybrid contribution 0.107 -1.293 1.024 1.653 sum -9.942 9.711 -5.317 14.881 Atomic orbital electron populations 1.22113 0.91049 1.03446 1.03108 1.24187 0.96156 0.95880 0.86359 1.22552 1.03025 0.92934 0.96192 1.22331 1.05471 0.94928 0.95258 1.21139 0.74502 0.85675 0.84579 1.90702 1.45804 1.84112 1.16640 1.49588 1.63288 1.05294 1.16195 1.21001 0.99097 0.80301 0.95975 0.88823 1.19732 0.88431 0.84169 0.85946 1.90563 1.54317 1.48418 1.51568 1.41783 1.14164 1.05590 1.57873 1.19656 0.89138 0.93211 1.40798 0.87936 1.25256 1.00000 0.95231 0.97218 1.69593 1.36034 1.01419 1.47126 0.85895 0.81678 0.77149 0.79409 1.19839 1.20876 1.19832 1.24723 1.06987 0.97273 0.92408 1.88166 1.83513 1.06351 1.25639 0.91462 0.91176 0.90203 0.88568 0.88716 0.87239 0.87694 0.77465 0.91703 0.85494 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.30 37.16 0.35 -0.96 16 2 C 0.17 2.23 0.87 -66.69 -0.06 2.17 16 3 C -0.11 -1.18 6.34 -25.35 -0.16 -1.34 16 4 C -0.14 -1.67 6.81 -26.69 -0.18 -1.86 16 5 C 0.55 10.22 7.27 -9.74 -0.07 10.15 16 6 O -0.50 -11.68 17.68 3.05 0.05 -11.63 16 7 N -0.60 -10.53 2.85 -152.16 -0.43 -10.97 16 8 C 0.14 2.65 3.61 -68.22 -0.25 2.40 16 9 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 10 C 0.43 10.56 7.02 -10.99 -0.08 10.49 16 11 O -0.57 -16.16 14.75 3.04 0.04 -16.12 16 12 N -0.56 -14.13 4.88 -10.96 -0.05 -14.19 16 13 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 14 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 17 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C -0.06 -0.97 6.93 37.90 0.26 -0.71 16 22 S -0.27 -3.93 22.30 -107.50 -2.40 -6.32 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 1.18 7.87 -51.93 -0.41 0.78 16 27 H 0.09 0.70 8.01 -51.93 -0.42 0.28 16 28 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.39 9.28 7.55 -40.82 -0.31 8.97 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.13 2.09 7.22 -51.93 -0.37 1.72 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -35.18 292.81 -7.08 -42.25 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.98 Total: 7.45 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -0.43 Total: 12.35 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.24 Total: -48.65 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: 0.10 Total: -27.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.40 Total: -6.32 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.18 -7.08 -42.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299531145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.210 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds