Wall clock time and date at job start Mon Mar 30 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53766 * 112.67314 * 2 1 4 4 C 1.54858 * 100.61434 * 90.51865 * 3 2 1 5 5 C 1.51130 * 104.39223 * 25.58255 * 4 3 2 6 6 O 1.21281 * 124.73757 * 171.10603 * 5 4 3 7 7 N 1.37044 * 110.68364 * 350.42734 * 5 4 3 8 8 C 1.46722 * 139.13526 * 164.37416 * 7 5 4 9 9 H 1.09002 * 108.66032 * 73.02862 * 8 7 5 10 10 C 1.50697 * 108.65733 * 315.04456 * 8 7 5 11 11 O 1.21298 * 120.00119 * 357.32478 * 10 8 7 12 12 N 1.34776 * 120.00251 * 177.32575 * 10 8 7 13 13 C 1.37097 * 120.00160 * 179.97438 * 12 10 8 14 14 H 1.08000 * 120.00023 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00130 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99610 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00098 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47135 * 59.99992 * 17 15 13 19 19 H 1.48501 * 109.47180 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47416 * 299.99825 * 17 15 13 21 21 C 1.54409 * 113.51328 * 194.03788 * 8 7 5 22 22 S 1.83566 * 112.74196 * 234.40902 * 2 1 3 23 23 H 1.09000 * 109.47386 * 184.57400 * 1 2 3 24 24 H 1.08995 * 109.47369 * 304.57657 * 1 2 3 25 25 H 1.09001 * 109.46751 * 64.57819 * 1 2 3 26 26 H 1.08990 * 111.18838 * 208.36344 * 3 2 1 27 27 H 1.09001 * 111.18184 * 332.68294 * 3 2 1 28 28 H 1.08998 * 110.44919 * 144.30749 * 4 3 2 29 29 H 1.08997 * 110.45689 * 266.73192 * 4 3 2 30 30 H 0.97001 * 119.99662 * 0.02562 * 12 10 8 31 31 H 0.97001 * 119.99589 * 180.02562 * 16 15 13 32 32 H 1.09001 * 110.99622 * 135.94274 * 21 8 7 33 33 H 1.08996 * 110.99705 * 259.74114 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1228 1.4188 0.0000 4 6 2.2454 1.6767 1.5220 5 6 2.3602 0.2973 2.1287 6 8 2.6274 0.0733 3.2903 7 7 2.1060 -0.6674 1.1891 8 6 2.2911 -2.1109 1.0028 9 1 1.5811 -2.6386 1.6396 10 6 3.6878 -2.4775 1.4338 11 8 4.4548 -1.6137 1.8036 12 7 4.0848 -3.7652 1.4083 13 6 5.3557 -4.0987 1.7999 14 1 6.0388 -3.3294 2.1284 15 6 5.7651 -5.4262 1.7731 16 7 4.9340 -6.3621 1.3729 17 14 7.4969 -5.8804 2.3060 18 1 7.7041 -5.4694 3.7179 19 1 7.6826 -7.3488 2.1861 20 1 8.4805 -5.1841 1.4384 21 6 2.0863 -2.5751 -0.4556 22 16 2.2397 -0.9853 -1.3767 23 1 -0.3634 -1.0244 0.0820 24 1 -0.3634 0.5832 0.8461 25 1 -0.3633 0.4412 -0.9282 26 1 3.0997 1.4376 -0.4828 27 1 1.4414 2.1303 -0.4664 28 1 3.1384 2.2633 1.7381 29 1 1.3569 2.1860 1.8949 30 1 3.4716 -4.4560 1.1122 31 1 5.2197 -7.2889 1.3546 32 1 2.8650 -3.2766 -0.7552 33 1 1.0969 -3.0117 -0.5912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299531145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:02 Heat of formation + Delta-G solvation = -75.617609 kcal Electronic energy + Delta-G solvation = -19241.410798 eV Core-core repulsion = 16199.777386 eV Total energy + Delta-G solvation = -3041.633413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68489 -40.01606 -38.05855 -36.11253 -35.07470 -33.30230 -31.22868 -30.64014 -27.35848 -26.39937 -25.33406 -22.43123 -21.78811 -20.38553 -19.75403 -18.56169 -18.04502 -17.16457 -16.85176 -16.54681 -15.99974 -15.69356 -15.64932 -15.21449 -14.88320 -14.54301 -14.28609 -14.03611 -13.75103 -13.61792 -13.43804 -13.29429 -12.98873 -12.83530 -12.52243 -12.16568 -12.02138 -11.97577 -11.61281 -11.34663 -10.93863 -10.67711 -10.11247 -9.77477 -8.86979 -8.54582 -6.04025 0.57287 0.95096 1.30267 1.34180 1.37613 1.48235 1.76090 1.87509 2.23911 2.84728 3.03643 3.21269 3.33551 3.56171 3.79469 3.92017 3.97551 4.18234 4.32485 4.35093 4.44410 4.64636 4.75811 4.80036 4.95398 5.02567 5.17225 5.28723 5.33368 5.86692 6.06193 6.47530 6.99185 7.05479 7.40438 7.96287 8.62002 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028761 B = 0.006002 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.298816 B = 4664.103301 C = 5171.218534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.175 3.825 3 C -0.101 4.101 4 C -0.125 4.125 5 C 0.532 3.468 6 O -0.567 6.567 7 N -0.618 5.618 8 C 0.149 3.851 9 H 0.106 0.894 10 C 0.426 3.574 11 O -0.615 6.615 12 N -0.561 5.561 13 C -0.338 4.338 14 H 0.072 0.928 15 C -0.005 4.005 16 N -0.913 5.913 17 Si 0.992 3.008 18 H -0.276 1.276 19 H -0.264 1.264 20 H -0.272 1.272 21 C -0.056 4.056 22 S -0.288 6.288 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.399 0.601 31 H 0.281 0.719 32 H 0.108 0.892 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 11.394 -7.549 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.020 4.020 3 C -0.140 4.140 4 C -0.166 4.166 5 C 0.324 3.676 6 O -0.444 6.444 7 N -0.356 5.356 8 C 0.040 3.960 9 H 0.124 0.876 10 C 0.212 3.788 11 O -0.501 6.501 12 N -0.198 5.198 13 C -0.468 4.468 14 H 0.090 0.910 15 C -0.206 4.206 16 N -0.553 5.553 17 Si 0.815 3.185 18 H -0.201 1.201 19 H -0.188 1.188 20 H -0.197 1.197 21 C -0.205 4.205 22 S -0.059 6.059 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.126 0.874 26 H 0.096 0.904 27 H 0.163 0.837 28 H 0.132 0.868 29 H 0.166 0.834 30 H 0.233 0.767 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.887 11.779 -7.728 18.433 hybrid contribution 0.663 -1.534 1.436 2.203 sum -11.224 10.245 -6.293 16.448 Atomic orbital electron populations 1.22162 0.87603 1.04118 1.05286 1.24725 0.98261 0.95903 0.83110 1.22681 1.03334 0.92676 0.95334 1.22433 1.07657 0.90987 0.95537 1.22500 0.72941 0.88122 0.84053 1.90652 1.48758 1.85458 1.19489 1.49802 1.63039 1.05016 1.17781 1.20988 0.94708 0.81904 0.98355 0.87605 1.20841 0.90555 0.83164 0.84237 1.90522 1.56639 1.49618 1.53352 1.41792 1.13596 1.06385 1.58044 1.19556 0.90381 0.93437 1.43386 0.90956 1.25997 1.03613 0.94515 0.96481 1.69637 1.37316 1.01818 1.46501 0.85016 0.77138 0.77740 0.78603 1.20139 1.18775 1.19673 1.24678 1.08714 0.97247 0.89819 1.88238 1.84541 1.06729 1.26387 0.91628 0.89522 0.87381 0.90379 0.83707 0.86838 0.83445 0.76675 0.90948 0.87400 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.30 71.98 0.67 -1.25 16 2 C 0.18 4.08 0.87 44.96 0.04 4.11 16 3 C -0.10 -1.87 6.34 31.49 0.20 -1.67 16 4 C -0.13 -2.72 6.81 30.62 0.21 -2.51 16 5 C 0.53 19.65 7.27 87.43 0.64 20.29 16 6 O -0.57 -27.47 17.68 -0.64 -0.01 -27.49 16 7 N -0.62 -21.15 2.85 -752.40 -2.14 -23.29 16 8 C 0.15 5.47 3.61 44.68 0.16 5.64 16 9 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 10 C 0.43 21.64 7.02 87.66 0.62 22.25 16 11 O -0.62 -37.09 14.75 -0.69 -0.01 -37.10 16 12 N -0.56 -29.61 4.88 -306.98 -1.50 -31.11 16 13 C -0.34 -19.86 9.68 84.04 0.81 -19.05 16 14 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 15 C -0.01 -0.28 5.50 84.93 0.47 0.18 16 16 N -0.91 -49.03 13.05 21.66 0.28 -48.75 16 17 Si 0.99 43.89 29.55 68.60 2.03 45.91 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 C -0.06 -1.61 6.93 72.46 0.50 -1.11 16 22 S -0.29 -8.03 22.30 -56.49 -1.26 -9.29 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.76 7.87 -2.39 -0.02 1.74 16 27 H 0.14 1.28 8.01 -2.39 -0.02 1.26 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.40 19.45 7.55 -92.71 -0.70 18.75 16 31 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.11 3.58 7.22 -2.39 -0.02 3.56 16 33 H 0.15 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -82.06 292.81 2.14 -79.92 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.44 Total: 24.30 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: 4.31 Total: 26.88 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -3.36 Total: -103.15 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -0.02 Total: -64.58 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.26 Total: -9.29 kcal Total: -82.06 2.14 -79.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299531145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.298 kcal (2) G-P(sol) polarization free energy of solvation -82.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds