Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00265 * 2 1 4 4 C 1.50701 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.28645 * 124.71901 * 90.00364 * 4 3 2 6 6 C 1.33561 * 115.76930 * 180.02562 * 5 4 3 7 7 C 1.47266 * 123.14317 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99792 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00144 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00376 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 C 1.35208 * 113.71613 * 0.24222 * 6 5 4 22 22 S 1.70772 * 124.72403 * 270.00486 * 4 3 2 23 23 H 1.08996 * 109.47377 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46656 * 299.99608 * 1 2 3 25 25 H 1.09002 * 109.47115 * 59.99198 * 1 2 3 26 26 H 1.09004 * 109.46667 * 60.00784 * 3 2 1 27 27 H 1.08997 * 109.47406 * 300.00367 * 3 2 1 28 28 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 29 29 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 32 32 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 33 33 H 1.07992 * 125.59011 * 179.75754 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2426 1.1287 -1.0584 6 6 5.5579 1.0239 -0.8511 7 6 6.5414 0.9456 -1.9443 8 8 7.7270 0.8506 -1.6900 9 7 6.1279 0.9791 -3.2267 10 6 7.1063 0.9006 -4.3142 11 1 7.9245 0.2433 -4.0200 12 6 7.6552 2.2981 -4.6082 13 6 6.4407 0.3520 -5.5499 14 1 5.3936 0.0886 -5.5276 15 6 7.1687 0.1864 -6.7091 16 7 8.4437 0.5076 -6.7365 17 14 6.3436 -0.4930 -8.2412 18 1 5.7899 0.6274 -9.0433 19 1 7.3409 -1.2367 -9.0520 20 1 5.2441 -1.4096 -7.8462 21 6 5.9015 0.9907 0.4561 22 16 4.4829 1.1091 1.4025 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 1.6887 1.8462 0.8901 27 1 1.6887 1.8464 -0.8899 28 1 5.1823 1.0552 -3.4295 29 1 6.8370 2.9554 -4.9025 30 1 8.3835 2.2396 -5.4171 31 1 8.1366 2.6949 -3.7144 32 1 8.9560 0.3907 -7.5519 33 1 6.9074 0.9058 0.8396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299572838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -39.435770 kcal Electronic energy + Delta-G solvation = -17938.712309 eV Core-core repulsion = 14898.647859 eV Total energy + Delta-G solvation = -3040.064451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20206 -38.41087 -37.71224 -34.79414 -32.32874 -31.60137 -28.98599 -28.26448 -26.25886 -25.24553 -24.68249 -21.67902 -20.28340 -19.49730 -18.52525 -16.84977 -16.79790 -16.08594 -15.86965 -15.49402 -15.09068 -14.78554 -14.34659 -13.91111 -13.42630 -13.11881 -12.86811 -12.45924 -12.33811 -11.98219 -11.73674 -11.62238 -11.07059 -10.91090 -10.71864 -10.30557 -10.19499 -10.08626 -9.86209 -9.67450 -9.28291 -9.01582 -8.91860 -8.51705 -7.86905 -6.08271 -4.16886 0.50963 1.18822 1.59346 2.15176 3.28369 3.34678 3.38085 3.43353 3.94286 4.03107 4.27603 4.46085 4.66970 5.00202 5.03602 5.09903 5.16392 5.24118 5.34318 5.40037 5.48822 6.03804 6.74400 6.85768 7.00020 7.17317 7.40871 7.47173 7.63930 7.75439 7.95698 8.17533 8.70305 8.80467 9.11246 9.50044 10.97952 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.004680 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.962088 B = 5981.023751 C = 7110.133988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.143 3.857 4 C 0.012 3.988 5 N -0.419 5.419 6 C 0.023 3.977 7 C 0.575 3.425 8 O -0.550 6.550 9 N -0.685 5.685 10 C 0.262 3.738 11 H 0.051 0.949 12 C -0.147 4.147 13 C -0.532 4.532 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.225 4.225 22 S 0.210 5.790 23 H 0.090 0.910 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.398 0.602 29 H 0.027 0.973 30 H 0.092 0.908 31 H 0.015 0.985 32 H 0.264 0.736 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.256 2.703 16.263 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.063 3.937 4 C -0.267 4.267 5 N -0.136 5.136 6 C -0.113 4.113 7 C 0.357 3.643 8 O -0.429 6.429 9 N -0.331 5.331 10 C 0.160 3.840 11 H 0.069 0.931 12 C -0.205 4.205 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.367 4.367 22 S 0.466 5.534 23 H 0.108 0.892 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.232 0.768 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.597 2.503 16.772 21.736 hybrid contribution -0.358 -0.161 -1.708 1.752 sum -13.955 2.342 15.064 20.668 Atomic orbital electron populations 1.22797 0.80111 1.03281 1.00262 1.87978 1.20188 1.26406 1.95499 1.20749 0.84469 0.85991 1.02458 1.26550 1.00554 1.07579 0.92024 1.66893 1.03518 1.12120 1.31070 1.20904 0.89841 1.06252 0.94284 1.17087 0.86382 0.78363 0.82502 1.90766 1.16056 1.52237 1.83855 1.46432 1.12230 1.69322 1.05132 1.18845 0.87861 0.94388 0.82868 0.93149 1.22080 1.00752 0.97284 1.00415 1.21221 0.96883 1.43749 0.95158 0.91947 1.24879 0.94830 0.95145 0.98820 1.69901 1.06936 1.47246 1.28152 0.86426 0.79118 0.79030 0.82415 1.20536 1.21073 1.19819 1.26658 1.05810 1.07339 0.96866 1.82581 0.95332 1.64120 1.11390 0.89190 0.93830 0.93514 0.90914 0.89862 0.76771 0.95362 0.88975 0.96610 0.92595 0.79217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.32 10.69 -35.23 -0.38 -4.70 16 3 C 0.14 1.43 6.51 36.01 0.23 1.67 16 4 C 0.01 0.16 6.97 -13.61 -0.09 0.07 16 5 N -0.42 -7.04 10.12 -8.51 -0.09 -7.13 16 6 C 0.02 0.41 6.70 -84.52 -0.57 -0.16 16 7 C 0.58 12.92 7.76 -12.59 -0.10 12.82 16 8 O -0.55 -13.84 16.37 5.26 0.09 -13.75 16 9 N -0.68 -15.99 5.07 -56.06 -0.28 -16.27 16 10 C 0.26 7.03 2.56 -69.09 -0.18 6.85 16 11 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 12 C -0.15 -3.80 9.26 37.16 0.34 -3.45 16 13 C -0.53 -14.73 8.73 -34.44 -0.30 -15.03 16 14 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 15 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 16 N -0.88 -25.43 11.32 55.43 0.63 -24.80 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.22 -3.30 10.62 29.65 0.31 -2.99 16 22 S 0.21 2.28 22.92 -107.50 -2.46 -0.19 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.40 8.67 8.06 -40.82 -0.33 8.34 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 33 H 0.19 2.57 8.03 -52.49 -0.42 2.14 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -32.84 305.54 -6.20 -39.03 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.96 Total: 4.15 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 0.67 Total: 2.86 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.26 Total: -48.20 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.29 Total: -18.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.46 Total: -0.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.84 -6.20 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299572838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.403 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds