Wall clock time and date at job start Mon Mar 30 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00265 * 2 1 4 4 C 1.50701 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.28645 * 124.71901 * 90.00364 * 4 3 2 6 6 C 1.33561 * 115.76930 * 180.02562 * 5 4 3 7 7 C 1.47266 * 123.14317 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99792 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00144 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00376 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46980 * 89.99582 * 17 15 13 19 19 H 1.48493 * 109.47135 * 209.99651 * 17 15 13 20 20 H 1.48498 * 109.47274 * 330.00048 * 17 15 13 21 21 C 1.35208 * 113.71613 * 0.24222 * 6 5 4 22 22 S 1.70772 * 124.72403 * 270.00486 * 4 3 2 23 23 H 1.08996 * 109.47377 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46656 * 299.99608 * 1 2 3 25 25 H 1.09002 * 109.47115 * 59.99198 * 1 2 3 26 26 H 1.09004 * 109.46667 * 60.00784 * 3 2 1 27 27 H 1.08997 * 109.47406 * 300.00367 * 3 2 1 28 28 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 29 29 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 32 32 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 33 33 H 1.07992 * 125.59011 * 179.75754 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2426 1.1287 -1.0584 6 6 5.5579 1.0239 -0.8511 7 6 6.5414 0.9456 -1.9443 8 8 7.7270 0.8506 -1.6900 9 7 6.1279 0.9791 -3.2267 10 6 7.1063 0.9006 -4.3142 11 1 7.9245 0.2433 -4.0200 12 6 7.6552 2.2981 -4.6082 13 6 6.4407 0.3520 -5.5499 14 1 5.3936 0.0886 -5.5276 15 6 7.1687 0.1864 -6.7091 16 7 8.4437 0.5076 -6.7365 17 14 6.3436 -0.4930 -8.2412 18 1 5.7899 0.6274 -9.0433 19 1 7.3409 -1.2367 -9.0520 20 1 5.2441 -1.4096 -7.8462 21 6 5.9015 0.9907 0.4561 22 16 4.4829 1.1091 1.4025 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 1.6887 1.8462 0.8901 27 1 1.6887 1.8464 -0.8899 28 1 5.1823 1.0552 -3.4295 29 1 6.8370 2.9554 -4.9025 30 1 8.3835 2.2396 -5.4171 31 1 8.1366 2.6949 -3.7144 32 1 8.9560 0.3907 -7.5519 33 1 6.9074 0.9058 0.8396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299572838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:49 Heat of formation + Delta-G solvation = -64.716774 kcal Electronic energy + Delta-G solvation = -17939.808576 eV Core-core repulsion = 14898.647859 eV Total energy + Delta-G solvation = -3041.160717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53175 -39.84236 -38.64809 -36.80293 -34.36359 -32.68646 -30.96765 -29.16489 -27.40057 -26.99606 -26.02080 -23.16339 -21.95381 -20.93998 -20.00854 -18.48610 -17.58089 -17.47980 -17.02228 -16.83192 -16.55321 -16.28346 -15.97884 -15.21490 -14.85053 -14.71647 -14.41266 -13.77310 -13.64529 -13.15284 -13.12059 -12.96148 -12.89217 -12.75970 -12.34680 -12.31956 -12.17054 -11.17260 -11.13299 -10.93060 -10.76213 -10.65753 -10.63206 -10.09854 -9.74800 -8.20394 -6.38218 -0.58933 0.20115 0.51478 0.84834 1.43133 1.44459 1.55512 2.27274 2.34913 2.51057 2.74723 3.09577 3.26348 3.77042 4.09460 4.19227 4.21464 4.45033 4.57202 4.63529 4.66929 4.79302 4.87643 4.93091 5.02783 5.36243 5.53643 5.62009 5.82434 6.04031 6.11777 6.37473 6.66782 6.86731 7.23793 7.39565 8.86330 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020675 B = 0.004680 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.962088 B = 5981.023751 C = 7110.133988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.140 3.860 4 C -0.005 4.005 5 N -0.453 5.453 6 C -0.013 4.013 7 C 0.572 3.428 8 O -0.589 6.589 9 N -0.687 5.687 10 C 0.268 3.732 11 H 0.004 0.996 12 C -0.132 4.132 13 C -0.551 4.551 14 H 0.067 0.933 15 C 0.017 3.983 16 N -0.915 5.915 17 Si 0.976 3.024 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.235 4.235 22 S 0.336 5.664 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.406 0.594 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.014 0.986 32 H 0.268 0.732 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 2.870 17.750 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.061 3.939 4 C -0.284 4.284 5 N -0.171 5.171 6 C -0.148 4.148 7 C 0.356 3.644 8 O -0.471 6.471 9 N -0.334 5.334 10 C 0.165 3.835 11 H 0.022 0.978 12 C -0.191 4.191 13 C -0.589 4.589 14 H 0.085 0.915 15 C -0.183 4.183 16 N -0.553 5.553 17 Si 0.800 3.200 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.378 4.378 22 S 0.594 5.406 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.241 0.759 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -16.277 2.680 18.294 24.634 hybrid contribution 0.405 -0.217 -1.968 2.021 sum -15.873 2.463 16.326 22.903 Atomic orbital electron populations 1.23001 0.78148 1.04146 1.01669 1.87918 1.22375 1.27157 1.95804 1.20998 0.82391 0.86028 1.04512 1.27232 1.02307 1.06098 0.92755 1.66837 1.02954 1.13974 1.33342 1.20251 0.90075 1.10733 0.93747 1.17674 0.86908 0.76742 0.83029 1.90719 1.18046 1.53792 1.84526 1.46217 1.11882 1.70108 1.05157 1.18497 0.87454 0.93746 0.83841 0.97787 1.21893 1.00479 0.97144 0.99567 1.21476 0.97218 1.44435 0.95745 0.91495 1.25793 0.95357 0.95111 1.02027 1.70036 1.08354 1.47778 1.29158 0.85294 0.78073 0.78531 0.78131 1.19374 1.20698 1.19220 1.26989 1.08488 1.05463 0.96835 1.82120 0.90742 1.60401 1.07385 0.88710 0.91393 0.93107 0.86900 0.89791 0.75893 0.94256 0.90867 0.96711 0.92317 0.78669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.32 10.69 -148.98 -1.59 -9.91 16 3 C 0.14 2.38 6.51 71.24 0.46 2.85 16 4 C -0.01 -0.12 6.97 88.58 0.62 0.49 16 5 N -0.45 -15.00 10.12 -180.83 -1.83 -16.83 16 6 C -0.01 -0.46 6.70 40.56 0.27 -0.19 16 7 C 0.57 26.79 7.76 86.62 0.67 27.46 16 8 O -0.59 -31.18 16.37 -4.10 -0.07 -31.25 16 9 N -0.69 -33.43 5.07 -449.54 -2.28 -35.71 16 10 C 0.27 15.02 2.56 44.24 0.11 15.13 16 11 H 0.00 0.27 7.58 -2.39 -0.02 0.26 16 12 C -0.13 -7.10 9.26 71.98 0.67 -6.44 16 13 C -0.55 -31.19 8.73 25.60 0.22 -30.97 16 14 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 15 C 0.02 0.97 5.30 84.66 0.45 1.42 16 16 N -0.92 -53.82 11.32 21.45 0.24 -53.58 16 17 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 C -0.23 -6.62 10.62 67.12 0.71 -5.91 16 22 S 0.34 6.10 22.92 -56.49 -1.29 4.80 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.41 18.29 8.06 -92.70 -0.75 17.54 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 4.21 6.07 -2.39 -0.01 4.19 16 31 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.20 5.13 8.03 -2.91 -0.02 5.10 16 Total: -1.00 -74.22 305.54 1.03 -73.18 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.39 Total: 18.26 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.44 Total: 5.41 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.86 Total: -106.12 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.66 Total: -41.16 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.29 Total: 4.80 kcal Total: -74.22 1.03 -73.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299572838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.468 kcal (2) G-P(sol) polarization free energy of solvation -74.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds