Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00061 * 2 1 4 4 C 1.50702 * 109.47449 * 179.97438 * 3 2 1 5 5 N 1.28642 * 124.71951 * 90.00038 * 4 3 2 6 6 C 1.33561 * 115.77046 * 179.97438 * 5 4 3 7 7 C 1.47269 * 123.14252 * 179.97438 * 6 5 4 8 8 O 1.21633 * 119.99362 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00152 * 0.03277 * 7 6 5 10 10 C 1.46500 * 119.99955 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47175 * 324.99716 * 10 9 7 12 12 C 1.53006 * 109.46998 * 84.99585 * 10 9 7 13 13 C 1.50697 * 109.46896 * 204.99514 * 10 9 7 14 14 H 1.07994 * 120.00496 * 0.02562 * 13 10 9 15 15 C 1.37887 * 119.99690 * 179.97438 * 13 10 9 16 16 N 1.31507 * 120.00093 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99676 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47515 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46678 * 119.99923 * 17 15 13 20 20 H 1.48493 * 109.47346 * 239.99833 * 17 15 13 21 21 C 1.35201 * 113.71382 * 0.27438 * 6 5 4 22 22 S 1.70766 * 124.72016 * 269.96748 * 4 3 2 23 23 H 1.08997 * 109.46781 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46598 * 299.99650 * 1 2 3 25 25 H 1.08997 * 109.46883 * 59.99983 * 1 2 3 26 26 H 1.09005 * 109.46876 * 60.00533 * 3 2 1 27 27 H 1.08999 * 109.47493 * 300.00464 * 3 2 1 28 28 H 0.96997 * 119.99935 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47002 * 179.97438 * 12 10 9 30 30 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 31 31 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 32 32 H 0.96999 * 120.00118 * 179.97438 * 16 15 13 33 33 H 1.08004 * 125.59180 * 179.73682 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2434 1.1285 -1.0564 6 6 5.5586 1.0249 -0.8481 7 6 6.5431 0.9464 -1.9405 8 8 7.7286 0.8526 -1.6851 9 7 6.1305 0.9785 -3.2231 10 6 7.1100 0.9009 -4.3098 11 1 8.0217 1.4204 -4.0150 12 6 7.4310 -0.5660 -4.6033 13 6 6.5407 1.5476 -5.5462 14 1 5.5488 1.9742 -5.5246 15 6 7.2868 1.5957 -6.7048 16 7 8.4952 1.0776 -6.7307 17 14 6.5814 2.3980 -8.2372 18 1 5.2148 2.9019 -7.9478 19 1 7.4497 3.5308 -8.6471 20 1 6.5192 1.3997 -9.3347 21 6 5.9011 0.9925 0.4594 22 16 4.4817 1.1108 1.4046 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 5.1851 1.0530 -3.4267 29 1 8.1594 -0.6238 -5.4121 30 1 7.8427 -1.0337 -3.7090 31 1 6.5193 -1.0855 -4.8981 32 1 9.0199 1.1111 -7.5459 33 1 6.9069 0.9083 0.8438 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299572840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -39.530510 kcal Electronic energy + Delta-G solvation = -17936.642798 eV Core-core repulsion = 14896.574239 eV Total energy + Delta-G solvation = -3040.068559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20242 -38.41212 -37.71425 -34.79371 -32.33220 -31.60212 -28.98517 -28.26627 -26.26264 -25.24614 -24.68343 -21.67982 -20.28383 -19.49740 -18.52556 -16.84960 -16.80391 -16.08865 -15.87305 -15.49984 -15.07918 -14.79771 -14.36276 -13.89355 -13.41309 -13.14827 -12.85591 -12.46069 -12.33886 -11.98316 -11.74696 -11.62316 -11.05925 -10.93528 -10.72036 -10.28339 -10.20030 -10.09056 -9.86067 -9.67542 -9.28442 -9.01205 -8.91901 -8.52112 -7.86988 -6.08864 -4.17383 0.51017 1.18753 1.59312 2.15238 3.26952 3.34360 3.38148 3.42824 3.93382 4.04101 4.26939 4.45856 4.66929 5.00057 5.03294 5.09941 5.16356 5.23625 5.34277 5.39263 5.48840 6.03800 6.73804 6.86586 7.01202 7.17867 7.40936 7.47223 7.63988 7.75489 7.95603 8.17422 8.70253 8.80187 9.11172 9.49548 10.97435 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004540 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.873311 B = 6166.087674 C = 7075.499289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.143 3.857 4 C 0.012 3.988 5 N -0.419 5.419 6 C 0.023 3.977 7 C 0.575 3.425 8 O -0.550 6.550 9 N -0.685 5.685 10 C 0.262 3.738 11 H 0.051 0.949 12 C -0.147 4.147 13 C -0.531 4.531 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.903 3.097 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.225 4.225 22 S 0.210 5.790 23 H 0.090 0.910 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.399 0.601 29 H 0.092 0.908 30 H 0.015 0.985 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.468 0.325 16.257 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.063 3.937 4 C -0.267 4.267 5 N -0.136 5.136 6 C -0.113 4.113 7 C 0.357 3.643 8 O -0.429 6.429 9 N -0.331 5.331 10 C 0.160 3.840 11 H 0.069 0.931 12 C -0.206 4.206 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.367 4.367 22 S 0.466 5.534 23 H 0.108 0.892 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.232 0.768 29 H 0.110 0.890 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.817 0.104 16.768 21.727 hybrid contribution -0.286 0.551 -1.709 1.819 sum -14.103 0.655 15.058 20.641 Atomic orbital electron populations 1.22797 0.80114 1.03264 1.00283 1.87973 1.20187 1.26431 1.95506 1.20753 0.84467 0.85968 1.02488 1.26545 1.00547 1.07575 0.92028 1.66891 1.03501 1.12115 1.31101 1.20902 0.89850 1.06246 0.94276 1.17089 0.86384 0.78363 0.82503 1.90769 1.16058 1.52266 1.83831 1.46430 1.12242 1.69308 1.05128 1.18852 0.88276 0.93961 0.82895 0.93144 1.22079 1.00891 0.97179 1.00411 1.21258 1.02308 1.38241 0.95163 0.91904 1.24885 0.94767 0.95223 0.98831 1.69912 1.09742 1.44434 1.28102 0.86373 0.79109 0.79025 0.82481 1.19708 1.20889 1.20861 1.26660 1.05798 1.07343 0.96870 1.82583 0.95328 1.64134 1.11386 0.89202 0.93821 0.93509 0.90912 0.89834 0.76766 0.88988 0.96591 0.95334 0.92646 0.79215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.28 10.69 -35.23 -0.38 -4.65 16 3 C 0.14 1.43 6.51 36.01 0.23 1.66 16 4 C 0.01 0.16 6.97 -13.61 -0.09 0.07 16 5 N -0.42 -7.04 10.12 -8.51 -0.09 -7.13 16 6 C 0.02 0.41 6.70 -84.53 -0.57 -0.15 16 7 C 0.58 12.92 7.76 -12.59 -0.10 12.82 16 8 O -0.55 -13.84 16.38 5.25 0.09 -13.75 16 9 N -0.68 -15.99 5.07 -56.06 -0.28 -16.27 16 10 C 0.26 7.02 2.56 -69.08 -0.18 6.84 16 11 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.15 -3.83 9.26 37.16 0.34 -3.49 16 13 C -0.53 -14.67 8.73 -34.44 -0.30 -14.97 16 14 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 15 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 16 N -0.88 -25.39 11.32 55.43 0.63 -24.76 16 17 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.22 -3.30 10.62 29.65 0.31 -2.99 16 22 S 0.21 2.27 22.92 -107.50 -2.46 -0.19 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.40 8.68 8.06 -40.82 -0.33 8.35 16 29 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 33 H 0.19 2.56 8.03 -52.48 -0.42 2.14 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -32.78 305.54 -6.20 -38.98 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.96 Total: 4.20 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 0.67 Total: 2.86 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.26 Total: -48.16 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.29 Total: -18.41 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.46 Total: -0.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.78 -6.20 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299572840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.550 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds