Wall clock time and date at job start Mon Mar 30 2020 01:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 C 1.53001 * 109.47376 * 120.00385 * 2 1 3 5 5 N 1.46500 * 109.47008 * 64.99929 * 4 2 1 6 6 C 1.38433 * 119.99620 * 179.97438 * 5 4 2 7 7 N 1.29425 * 125.16620 * 179.97438 * 6 5 4 8 8 C 1.33660 * 116.90417 * 180.02562 * 7 6 5 9 9 C 1.46952 * 122.50145 * 179.97438 * 8 7 6 10 10 O 1.21615 * 119.99940 * 180.02562 * 9 8 7 11 11 O 1.34836 * 120.00328 * 0.02562 * 9 8 7 12 12 C 1.34874 * 117.00280 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99998 * 0.02562 * 12 11 9 14 14 C 1.38767 * 119.99852 * 179.97438 * 12 11 9 15 15 N 1.31447 * 119.99943 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99683 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00430 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47295 * 299.99829 * 16 14 12 20 20 C 1.35218 * 114.99616 * 0.24522 * 8 7 6 21 21 S 1.76046 * 125.16995 * 0.02644 * 6 5 4 22 22 H 1.08996 * 109.46826 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46674 * 299.99311 * 1 2 3 24 24 H 1.08992 * 109.47524 * 59.99687 * 1 2 3 25 25 H 1.08999 * 109.47053 * 240.00477 * 2 1 3 26 26 H 1.09000 * 109.46758 * 180.02562 * 3 2 1 27 27 H 1.08992 * 109.47270 * 300.00468 * 3 2 1 28 28 H 1.08999 * 109.46861 * 60.00359 * 3 2 1 29 29 H 1.09000 * 109.46827 * 304.99741 * 4 2 1 30 30 H 1.08998 * 109.46803 * 185.00389 * 4 2 1 31 31 H 0.96998 * 120.00016 * 359.97438 * 5 4 2 32 32 H 0.97005 * 119.99897 * 179.97438 * 15 14 12 33 33 H 1.08001 * 125.87482 * 179.73143 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 2.0059 -2.9910 2.2176 7 7 1.7167 -4.2515 2.2688 8 6 2.1410 -4.9263 3.3416 9 6 1.8810 -6.3609 3.5258 10 8 2.2882 -6.9298 4.5206 11 8 1.1910 -7.0464 2.5920 12 6 0.9867 -8.3595 2.8226 13 1 1.3696 -8.8154 3.7237 14 6 0.2837 -9.1244 1.9027 15 7 -0.1827 -8.5693 0.8062 16 14 0.0015 -10.9431 2.2218 17 1 -0.7606 -11.1115 3.4852 18 1 -0.7708 -11.5290 1.0968 19 1 1.3106 -11.6345 2.3373 20 6 2.8224 -4.1892 4.2476 21 16 2.9159 -2.5333 3.6535 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6055 -0.2618 2.1369 30 1 3.1263 -0.6443 1.2950 31 1 1.1483 -2.4662 0.4318 32 1 -0.6738 -9.1040 0.1629 33 1 3.2387 -4.5533 5.1753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309348301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:49 Heat of formation + Delta-G solvation = -39.409630 kcal Electronic energy + Delta-G solvation = -17714.955321 eV Core-core repulsion = 14674.892004 eV Total energy + Delta-G solvation = -3040.063317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.53020 -38.37858 -37.37981 -35.10886 -33.85984 -32.12851 -29.35003 -27.52156 -26.26000 -25.80956 -24.00525 -21.79291 -20.72469 -19.08424 -18.32608 -17.61013 -16.50673 -15.95224 -15.61117 -15.28830 -14.80810 -14.67703 -14.28356 -14.03019 -13.86264 -13.23278 -12.94393 -12.75541 -12.45088 -12.35892 -11.78281 -11.46491 -11.41151 -11.32491 -11.17867 -11.07590 -10.45549 -10.44290 -10.08737 -9.81676 -9.33294 -9.08939 -8.92275 -8.55259 -7.57848 -6.40210 -4.03238 1.10763 1.31679 1.90248 2.72875 3.01772 3.20560 3.23018 3.25206 3.99723 4.19371 4.35523 4.51084 4.62530 4.70137 5.15908 5.18026 5.19508 5.21285 5.32979 5.39563 5.52980 5.59375 5.73514 5.76285 5.90294 5.98537 6.11160 6.70014 6.86477 7.37821 7.41840 7.94028 8.18207 8.72252 9.06326 9.90136 10.76479 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.004248 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.983075 B = 6590.440519 C = 7617.395785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.145 4.145 4 C 0.127 3.873 5 N -0.695 5.695 6 C 0.344 3.656 7 N -0.501 5.501 8 C 0.114 3.886 9 C 0.457 3.543 10 O -0.551 6.551 11 O -0.182 6.182 12 C -0.377 4.377 13 H 0.098 0.902 14 C 0.042 3.958 15 N -0.851 5.851 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.268 1.268 20 C -0.231 4.231 21 S 0.038 5.962 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.414 0.586 32 H 0.271 0.729 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 19.232 -1.716 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.202 4.202 4 C 0.003 3.997 5 N -0.338 5.338 6 C -0.031 4.031 7 N -0.226 5.226 8 C -0.015 4.015 9 C 0.303 3.697 10 O -0.450 6.450 11 O -0.087 6.087 12 C -0.454 4.454 13 H 0.116 0.884 14 C -0.163 4.163 15 N -0.486 5.486 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.193 1.193 20 C -0.372 4.372 21 S 0.283 5.717 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.254 0.746 32 H 0.081 0.919 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.633 19.869 -1.714 20.271 hybrid contribution -0.486 -1.806 -0.055 1.871 sum 3.148 18.062 -1.768 18.420 Atomic orbital electron populations 1.21891 0.94320 1.02555 1.02144 1.21303 0.96837 0.96731 0.97574 1.21766 1.01251 0.94805 1.02411 1.21595 0.99779 0.79341 0.99008 1.43818 1.61669 1.06870 1.21471 1.24210 0.96301 0.89947 0.92632 1.66768 1.27285 1.03542 1.24999 1.19248 0.98687 0.93857 0.89700 1.19567 0.81481 0.85306 0.83357 1.90672 1.54004 1.69419 1.30884 1.84045 1.59129 1.23225 1.42295 1.21345 1.35433 0.80890 1.07723 0.88438 1.25418 0.95645 1.00564 0.94702 1.70036 1.32974 1.36849 1.08761 0.85701 0.78939 0.80058 0.78223 1.19346 1.20309 1.19337 1.26464 1.10964 0.93434 1.06382 1.84538 1.57746 1.11620 1.17781 0.92079 0.92334 0.92262 0.90070 0.92267 0.91979 0.92249 0.91536 0.91580 0.74635 0.91907 0.79777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.07 37.16 0.34 -0.79 16 2 C -0.11 -0.74 2.96 -90.62 -0.27 -1.01 16 3 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 4 C 0.13 1.13 4.98 -4.04 -0.02 1.11 16 5 N -0.70 -8.85 5.43 -61.02 -0.33 -9.18 16 6 C 0.34 5.76 8.42 -88.07 -0.74 5.02 16 7 N -0.50 -10.95 10.52 -10.62 -0.11 -11.06 16 8 C 0.11 2.63 6.67 -84.62 -0.56 2.06 16 9 C 0.46 12.68 7.87 34.26 0.27 12.95 16 10 O -0.55 -15.76 15.91 -19.36 -0.31 -16.07 16 11 O -0.18 -5.66 9.66 -21.98 -0.21 -5.87 16 12 C -0.38 -11.63 9.65 30.93 0.30 -11.34 16 13 H 0.10 2.97 6.86 -52.49 -0.36 2.61 16 14 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 15 N -0.85 -25.65 13.67 55.48 0.76 -24.89 16 16 Si 0.95 21.65 29.55 -169.99 -5.02 16.63 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C -0.23 -4.29 10.84 29.66 0.32 -3.96 16 21 S 0.04 0.54 22.61 -107.50 -2.43 -1.89 16 22 H 0.06 0.53 7.18 -51.93 -0.37 0.15 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.41 5.20 7.78 -40.82 -0.32 4.88 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.19 3.15 8.01 -52.49 -0.42 2.73 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -35.13 307.09 -7.14 -42.27 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.99 Total: 0.71 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.12 Total: 4.72 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.32 Total: -45.13 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.52 Total: -21.94 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.43 Total: -1.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.13 -7.14 -42.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309348301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.865 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds