Wall clock time and date at job start Mon Mar 30 2020 01:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 C 1.53001 * 109.47376 * 120.00385 * 2 1 3 5 5 N 1.46500 * 109.47008 * 64.99929 * 4 2 1 6 6 C 1.38433 * 119.99620 * 179.97438 * 5 4 2 7 7 N 1.29425 * 125.16620 * 179.97438 * 6 5 4 8 8 C 1.33660 * 116.90417 * 180.02562 * 7 6 5 9 9 C 1.46952 * 122.50145 * 179.97438 * 8 7 6 10 10 O 1.21615 * 119.99940 * 180.02562 * 9 8 7 11 11 O 1.34836 * 120.00328 * 0.02562 * 9 8 7 12 12 C 1.34874 * 117.00280 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99998 * 0.02562 * 12 11 9 14 14 C 1.38767 * 119.99852 * 179.97438 * 12 11 9 15 15 N 1.31447 * 119.99943 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99683 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00430 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47295 * 299.99829 * 16 14 12 20 20 C 1.35218 * 114.99616 * 0.24522 * 8 7 6 21 21 S 1.76046 * 125.16995 * 0.02644 * 6 5 4 22 22 H 1.08996 * 109.46826 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46674 * 299.99311 * 1 2 3 24 24 H 1.08992 * 109.47524 * 59.99687 * 1 2 3 25 25 H 1.08999 * 109.47053 * 240.00477 * 2 1 3 26 26 H 1.09000 * 109.46758 * 180.02562 * 3 2 1 27 27 H 1.08992 * 109.47270 * 300.00468 * 3 2 1 28 28 H 1.08999 * 109.46861 * 60.00359 * 3 2 1 29 29 H 1.09000 * 109.46827 * 304.99741 * 4 2 1 30 30 H 1.08998 * 109.46803 * 185.00389 * 4 2 1 31 31 H 0.96998 * 120.00016 * 359.97438 * 5 4 2 32 32 H 0.97005 * 119.99897 * 179.97438 * 15 14 12 33 33 H 1.08001 * 125.87482 * 179.73143 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1904 6 6 2.0059 -2.9910 2.2176 7 7 1.7167 -4.2515 2.2688 8 6 2.1410 -4.9263 3.3416 9 6 1.8810 -6.3609 3.5258 10 8 2.2882 -6.9298 4.5206 11 8 1.1910 -7.0464 2.5920 12 6 0.9867 -8.3595 2.8226 13 1 1.3696 -8.8154 3.7237 14 6 0.2837 -9.1244 1.9027 15 7 -0.1827 -8.5693 0.8062 16 14 0.0015 -10.9431 2.2218 17 1 -0.7606 -11.1115 3.4852 18 1 -0.7708 -11.5290 1.0968 19 1 1.3106 -11.6345 2.3373 20 6 2.8224 -4.1892 4.2476 21 16 2.9159 -2.5333 3.6535 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6055 -0.2618 2.1369 30 1 3.1263 -0.6443 1.2950 31 1 1.1483 -2.4662 0.4318 32 1 -0.6738 -9.1040 0.1629 33 1 3.2387 -4.5533 5.1753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309348301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:48 Heat of formation + Delta-G solvation = -63.671755 kcal Electronic energy + Delta-G solvation = -17716.007406 eV Core-core repulsion = 14674.892004 eV Total energy + Delta-G solvation = -3041.115402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35391 -40.04515 -38.37738 -37.25508 -34.83821 -34.34076 -30.77737 -28.13490 -28.05183 -26.97084 -25.69729 -23.25495 -21.66478 -20.62498 -20.02042 -19.65724 -18.00274 -17.24953 -16.90629 -16.80319 -16.57491 -16.19845 -16.05098 -15.30335 -14.79787 -14.50227 -14.17681 -14.04706 -13.68506 -13.41012 -13.16614 -12.96023 -12.90061 -12.41259 -12.17805 -12.08323 -12.01727 -11.93936 -11.68283 -11.34276 -11.34111 -10.73079 -10.65412 -10.21487 -8.84503 -8.57311 -6.36180 -0.39317 0.01636 0.44239 1.03221 1.33155 1.46967 1.50874 1.90747 2.13991 2.29173 2.81114 2.99071 3.67493 3.79946 3.92600 4.11307 4.25688 4.50539 4.53955 4.63711 4.67028 4.84312 4.92666 4.99361 5.06553 5.13162 5.23991 5.40148 5.41534 5.65788 5.75987 6.21146 6.47832 6.83493 6.88880 7.71620 8.62949 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.004248 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.983075 B = 6590.440519 C = 7617.395785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.141 4.141 4 C 0.118 3.882 5 N -0.684 5.684 6 C 0.331 3.669 7 N -0.559 5.559 8 C 0.071 3.929 9 C 0.457 3.543 10 O -0.571 6.571 11 O -0.218 6.218 12 C -0.427 4.427 13 H 0.088 0.912 14 C -0.004 4.004 15 N -0.895 5.895 16 Si 1.026 2.974 17 H -0.258 1.258 18 H -0.257 1.257 19 H -0.258 1.258 20 C -0.225 4.225 21 S 0.164 5.836 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.413 0.587 32 H 0.281 0.719 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 21.275 -1.465 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 C -0.199 4.199 4 C -0.004 4.004 5 N -0.326 5.326 6 C -0.043 4.043 7 N -0.286 5.286 8 C -0.058 4.058 9 C 0.304 3.696 10 O -0.471 6.471 11 O -0.124 6.124 12 C -0.502 4.502 13 H 0.106 0.894 14 C -0.205 4.205 15 N -0.531 5.531 16 Si 0.843 3.157 17 H -0.183 1.183 18 H -0.181 1.181 19 H -0.183 1.183 20 C -0.368 4.368 21 S 0.411 5.589 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.252 0.748 32 H 0.090 0.910 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.369 22.002 -1.480 22.481 hybrid contribution -0.604 -2.089 -0.088 2.177 sum 3.764 19.913 -1.568 20.326 Atomic orbital electron populations 1.21903 0.94732 1.01585 1.02792 1.21279 0.96411 0.97607 0.96529 1.21752 1.01663 0.93399 1.03084 1.21965 1.00788 0.77103 1.00570 1.44210 1.60355 1.07779 1.20231 1.24539 0.96040 0.89362 0.94369 1.66621 1.30020 1.06107 1.25896 1.18791 1.02691 0.91919 0.92422 1.20544 0.79469 0.87346 0.82248 1.90607 1.54376 1.70727 1.31346 1.84073 1.60817 1.23679 1.43867 1.21642 1.38223 0.81601 1.08779 0.89447 1.26746 0.94042 1.06022 0.93738 1.70136 1.33747 1.39375 1.09879 0.84597 0.79487 0.72610 0.79019 1.18271 1.18106 1.18254 1.26907 1.07861 0.96435 1.05614 1.84043 1.54796 1.06175 1.13874 0.93828 0.92046 0.91334 0.90197 0.91602 0.91327 0.91638 0.90371 0.90173 0.74797 0.90993 0.78650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.07 71.98 0.65 -1.35 16 2 C -0.10 -1.16 2.96 -10.79 -0.03 -1.19 16 3 C -0.14 -1.12 9.19 71.98 0.66 -0.45 16 4 C 0.12 1.76 4.98 86.38 0.43 2.19 16 5 N -0.68 -16.41 5.43 -346.98 -1.89 -18.30 16 6 C 0.33 10.70 8.42 179.46 1.51 12.21 16 7 N -0.56 -24.99 10.52 -187.51 -1.97 -26.96 16 8 C 0.07 3.36 6.67 40.45 0.27 3.63 16 9 C 0.46 26.70 7.87 70.10 0.55 27.25 16 10 O -0.57 -34.18 15.91 19.46 0.31 -33.87 16 11 O -0.22 -14.41 9.66 10.07 0.10 -14.32 16 12 C -0.43 -27.73 9.65 67.95 0.66 -27.08 16 13 H 0.09 5.63 6.86 -2.91 -0.02 5.61 16 14 C 0.00 -0.26 5.49 84.88 0.47 0.20 16 15 N -0.90 -55.86 13.67 21.63 0.30 -55.57 16 16 Si 1.03 45.00 29.55 68.60 2.03 47.03 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 20 C -0.22 -8.12 10.84 67.12 0.73 -7.39 16 21 S 0.16 4.16 22.61 -56.49 -1.28 2.89 16 22 H 0.04 0.72 7.18 -2.39 -0.02 0.71 16 23 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.41 10.21 7.78 -92.71 -0.72 9.49 16 32 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 33 H 0.20 6.42 8.01 -2.91 -0.02 6.40 16 Total: -1.00 -81.80 307.09 3.90 -77.90 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.41 Total: 13.16 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.89 Total: 8.03 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.56 Total: -100.82 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: 0.41 Total: -48.19 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.28 Total: 2.89 kcal Total: -81.80 3.90 -77.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309348301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.231 kcal (2) G-P(sol) polarization free energy of solvation -81.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds