Wall clock time and date at job start Mon Mar 30 2020 02:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.39008 * 119.99895 * 179.97438 * 2 1 3 13 13 C 1.39138 * 119.70342 * 184.73246 * 12 2 1 14 14 C 1.38302 * 119.09635 * 179.76049 * 13 12 2 15 15 C 1.38891 * 118.50325 * 0.50094 * 14 13 12 16 16 S 1.76193 * 120.33287 * 179.71160 * 15 14 13 17 17 C 1.81396 * 104.45149 * 270.02375 * 16 15 14 18 18 O 1.42096 * 104.27820 * 26.09815 * 16 15 14 19 19 O 1.42107 * 104.27600 * 153.95208 * 16 15 14 20 20 C 1.38028 * 119.32712 * 359.73410 * 15 14 13 21 21 N 1.31974 * 120.85486 * 0.02562 * 20 15 14 22 22 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 23 23 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 24 24 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 25 25 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 26 26 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.08001 * 120.45414 * 359.97167 * 13 12 2 29 29 H 1.07994 * 120.74888 * 180.22034 * 14 13 12 30 30 H 1.09000 * 109.46990 * 60.00130 * 17 16 15 31 31 H 1.08999 * 109.47350 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.47100 * 300.00242 * 17 16 15 33 33 H 1.07994 * 119.56787 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 2.8607 2.4165 4.3673 10 1 4.9014 3.5241 3.6670 11 1 2.8017 4.7373 3.6676 12 6 2.1600 -1.2039 0.0005 13 6 3.5478 -1.1987 0.1002 14 6 4.2262 -2.4039 0.1046 15 6 3.4921 -3.5781 -0.0019 16 16 4.3078 -5.1399 -0.0090 17 6 4.6494 -5.4642 -1.7607 18 8 5.5169 -4.9069 0.7001 19 8 3.3319 -6.0471 0.4851 20 6 2.1172 -3.5091 -0.1026 21 7 1.4959 -2.3448 -0.0993 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6084 2.0284 -0.5138 26 1 3.1499 1.1384 -0.5137 27 1 4.0310 4.4434 0.8504 28 1 4.0876 -0.2664 0.1767 29 1 5.3028 -2.4311 0.1844 30 1 5.2832 -4.6724 -2.1599 31 1 5.1588 -6.4227 -1.8601 32 1 3.7110 -5.4927 -2.3147 33 1 1.5426 -4.4197 -0.1860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309357071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:26 Heat of formation + Delta-G solvation = -24.156607 kcal Electronic energy + Delta-G solvation = -18368.909397 eV Core-core repulsion = 15329.507501 eV Total energy + Delta-G solvation = -3039.401896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81465 -36.94599 -36.18773 -35.77166 -32.95103 -32.02906 -30.25797 -29.46876 -28.10693 -25.58932 -23.71721 -22.73071 -20.94873 -18.84587 -17.60801 -16.78822 -16.47959 -16.41650 -16.07339 -15.28322 -14.71863 -14.32627 -14.25266 -13.54737 -13.44142 -13.24675 -12.93072 -12.85545 -12.65545 -12.27419 -11.95849 -11.83167 -11.63659 -11.45543 -11.08816 -11.04619 -10.87081 -10.57953 -10.29079 -10.14262 -9.68801 -9.22757 -9.07380 -8.66983 -7.15045 -6.26486 -4.36638 0.22642 1.35795 1.76082 3.07826 3.17283 3.26167 3.30703 3.62011 3.88299 4.21964 4.25085 4.29995 4.71080 4.84371 4.90782 5.05615 5.19537 5.49641 5.54222 5.64359 5.85976 5.98824 6.08615 6.27185 6.31427 6.38909 6.74666 6.98568 7.02231 7.47800 7.69813 7.91245 8.02277 8.45057 8.73227 9.31781 10.78256 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.004910 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.137015 B = 5701.812637 C = 6233.471833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.573 5.573 3 C 0.244 3.756 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.450 3.550 13 C -0.238 4.238 14 C 0.043 3.957 15 C -0.798 4.798 16 S 2.518 3.482 17 C -0.654 4.654 18 O -0.948 6.948 19 O -0.950 6.950 20 C 0.245 3.755 21 N -0.567 5.567 22 H 0.043 0.957 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.266 0.734 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 -13.199 -6.170 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.276 5.276 3 C 0.125 3.875 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.211 3.789 13 C -0.264 4.264 14 C 0.017 3.983 15 C -0.894 4.894 16 S 2.698 3.302 17 C -0.803 4.803 18 O -0.945 6.945 19 O -0.947 6.947 20 C 0.081 3.919 21 N -0.287 5.287 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.441 -13.144 -5.580 14.286 hybrid contribution 0.833 1.105 0.345 1.426 sum 0.392 -12.040 -5.234 13.134 Atomic orbital electron populations 1.21550 0.79868 1.02670 1.00567 1.47431 1.06049 1.03974 1.70119 1.19570 0.92306 0.77740 0.97929 1.21515 1.37216 1.07075 0.92065 0.91925 1.24948 0.95024 0.96009 0.97794 1.69924 1.37790 1.14317 1.30915 0.86400 0.78208 0.78565 0.84105 1.19628 1.20630 1.20767 1.18770 0.88808 0.86209 0.85080 1.21730 0.93806 1.00091 1.10800 1.20883 0.99636 0.90347 0.87398 1.30553 1.06385 1.19894 1.32559 1.04417 0.74434 0.74322 0.77044 1.30280 1.12121 1.11469 1.26454 1.93549 1.46746 1.85303 1.68867 1.93542 1.60588 1.63240 1.77310 1.22037 0.89574 0.95206 0.85111 1.67319 1.40075 0.97544 1.23736 0.93820 0.91295 0.91114 0.94013 0.94091 0.92397 0.83036 0.84096 0.85229 0.85725 0.85279 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.42 59.84 0.62 2.32 16 2 N -0.57 -11.86 2.97 -183.10 -0.54 -12.41 16 3 C 0.24 5.72 4.79 -5.19 -0.02 5.70 16 4 C -0.54 -14.00 9.34 -34.44 -0.32 -14.32 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.45 9.01 7.37 -155.02 -1.14 7.87 16 13 C -0.24 -4.56 9.19 -39.22 -0.36 -4.92 16 14 C 0.04 0.69 9.59 -39.32 -0.38 0.32 16 15 C -0.80 -11.64 5.67 -39.42 -0.22 -11.87 16 16 S 2.52 29.29 5.81 -107.50 -0.62 28.66 16 17 C -0.65 -4.60 10.80 101.05 1.09 -3.51 16 18 O -0.95 -14.13 17.20 -57.54 -0.99 -15.12 16 19 O -0.95 -13.50 17.14 -57.54 -0.99 -14.49 16 20 C 0.25 3.81 10.63 -17.57 -0.19 3.63 16 21 N -0.57 -10.43 9.16 -12.44 -0.11 -10.54 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.07 1.16 7.45 -51.93 -0.39 0.78 16 24 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 25 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 26 H 0.04 0.99 6.37 -51.93 -0.33 0.66 16 27 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.15 3.09 6.22 -52.49 -0.33 2.76 16 29 H 0.14 1.93 7.66 -52.49 -0.40 1.53 16 30 H 0.13 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.12 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.16 2.01 7.57 -52.49 -0.40 1.61 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -32.64 299.79 -7.96 -40.60 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.92 Total: -0.09 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.02 Total: -13.16 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.08 Total: -46.49 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.98 Total: -29.61 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 29.29 SS G_CDS: -0.62 Total: 28.66 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.64 -7.96 -40.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309357071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.442 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds