Wall clock time and date at job start Mon Mar 30 2020 02:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.39008 * 119.99895 * 179.97438 * 2 1 3 13 13 C 1.39138 * 119.70342 * 184.73246 * 12 2 1 14 14 C 1.38302 * 119.09635 * 179.76049 * 13 12 2 15 15 C 1.38891 * 118.50325 * 0.50094 * 14 13 12 16 16 S 1.76193 * 120.33287 * 179.71160 * 15 14 13 17 17 C 1.81396 * 104.45149 * 270.02375 * 16 15 14 18 18 O 1.42096 * 104.27820 * 26.09815 * 16 15 14 19 19 O 1.42107 * 104.27600 * 153.95208 * 16 15 14 20 20 C 1.38028 * 119.32712 * 359.73410 * 15 14 13 21 21 N 1.31974 * 120.85486 * 0.02562 * 20 15 14 22 22 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 23 23 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 24 24 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 25 25 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 26 26 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.08001 * 120.45414 * 359.97167 * 13 12 2 29 29 H 1.07994 * 120.74888 * 180.22034 * 14 13 12 30 30 H 1.09000 * 109.46990 * 60.00130 * 17 16 15 31 31 H 1.08999 * 109.47350 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.47100 * 300.00242 * 17 16 15 33 33 H 1.07994 * 119.56787 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 2.8607 2.4165 4.3673 10 1 4.9014 3.5241 3.6670 11 1 2.8017 4.7373 3.6676 12 6 2.1600 -1.2039 0.0005 13 6 3.5478 -1.1987 0.1002 14 6 4.2262 -2.4039 0.1046 15 6 3.4921 -3.5781 -0.0019 16 16 4.3078 -5.1399 -0.0090 17 6 4.6494 -5.4642 -1.7607 18 8 5.5169 -4.9069 0.7001 19 8 3.3319 -6.0471 0.4851 20 6 2.1172 -3.5091 -0.1026 21 7 1.4959 -2.3448 -0.0993 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6084 2.0284 -0.5138 26 1 3.1499 1.1384 -0.5137 27 1 4.0310 4.4434 0.8504 28 1 4.0876 -0.2664 0.1767 29 1 5.3028 -2.4311 0.1844 30 1 5.2832 -4.6724 -2.1599 31 1 5.1588 -6.4227 -1.8601 32 1 3.7110 -5.4927 -2.3147 33 1 1.5426 -4.4197 -0.1860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309357071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:25 Heat of formation + Delta-G solvation = -47.303561 kcal Electronic energy + Delta-G solvation = -18369.913124 eV Core-core repulsion = 15329.507501 eV Total energy + Delta-G solvation = -3040.405624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20401 -37.99671 -37.71596 -36.83011 -34.86078 -33.45059 -31.59388 -30.14008 -29.88049 -27.12874 -25.35850 -24.17467 -22.44805 -19.89571 -18.85015 -18.70371 -17.84761 -17.80019 -17.01767 -16.60344 -16.27831 -15.82321 -15.68511 -15.08766 -14.50090 -14.33700 -14.05386 -13.95679 -13.82837 -13.72265 -13.34910 -13.15439 -13.01778 -12.89233 -12.78553 -12.63650 -12.28687 -12.05043 -11.85596 -11.68828 -11.18236 -10.75591 -10.68324 -10.42664 -8.72713 -8.21846 -6.44329 -0.67650 0.03479 0.39437 1.35053 1.38302 1.48931 2.01352 2.17454 2.36383 2.70191 3.01181 3.20786 3.32805 3.55494 3.92709 4.09189 4.15705 4.22458 4.44582 4.49623 4.62290 4.74966 4.85545 4.91065 4.95336 5.05176 5.06170 5.14528 5.55646 5.63028 5.92919 5.99573 6.49892 6.65197 7.06309 7.28651 8.76796 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.004910 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.137015 B = 5701.812637 C = 6233.471833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.591 5.591 3 C 0.262 3.738 4 C -0.548 4.548 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.429 3.571 13 C -0.267 4.267 14 C 0.049 3.951 15 C -0.791 4.791 16 S 2.531 3.469 17 C -0.624 4.624 18 O -0.983 6.983 19 O -0.976 6.976 20 C 0.235 3.765 21 N -0.576 5.576 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -15.380 -6.871 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.297 5.297 3 C 0.141 3.859 4 C -0.587 4.587 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.199 1.199 12 C 0.192 3.808 13 C -0.293 4.293 14 C 0.024 3.976 15 C -0.882 4.882 16 S 2.712 3.288 17 C -0.778 4.778 18 O -0.980 6.980 19 O -0.973 6.973 20 C 0.072 3.928 21 N -0.296 5.296 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.180 0.820 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.171 0.829 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.057 -15.324 -6.236 16.545 hybrid contribution 0.749 1.543 0.473 1.779 sum 0.806 -13.781 -5.763 14.959 Atomic orbital electron populations 1.21594 0.78395 1.02606 1.01598 1.47250 1.06892 1.03369 1.72142 1.19090 0.91655 0.78877 0.96264 1.21674 1.37110 1.07049 0.92849 0.93397 1.25655 0.94809 0.96063 1.01282 1.70003 1.38458 1.14762 1.32606 0.85484 0.78165 0.78163 0.79721 1.19996 1.20083 1.19885 1.18904 0.89140 0.86531 0.86205 1.21676 0.93894 1.00469 1.13237 1.21189 1.00838 0.89835 0.85752 1.31139 1.06315 1.21129 1.29592 1.04190 0.72892 0.72329 0.79356 1.30031 1.14217 1.13727 1.19817 1.93509 1.47339 1.85209 1.71950 1.93509 1.61373 1.62755 1.79695 1.22665 0.90492 0.95294 0.84306 1.67331 1.40494 0.97769 1.23986 0.92210 0.90836 0.91575 0.95517 0.95599 0.92090 0.85364 0.81951 0.83411 0.82663 0.82893 0.78866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.59 10.42 127.77 1.33 4.92 16 2 N -0.59 -25.34 2.97 -733.22 -2.18 -27.52 16 3 C 0.26 12.88 4.79 85.63 0.41 13.30 16 4 C -0.55 -29.40 9.34 25.60 0.24 -29.16 16 5 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 6 C 0.02 1.20 5.46 84.66 0.46 1.66 16 7 N -0.92 -51.10 13.29 21.45 0.28 -50.82 16 8 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 C 0.43 17.54 7.37 133.07 0.98 18.52 16 13 C -0.27 -10.51 9.19 22.50 0.21 -10.30 16 14 C 0.05 1.56 9.59 22.44 0.22 1.77 16 15 C -0.79 -21.57 5.67 22.38 0.13 -21.44 16 16 S 2.53 51.40 5.81 -56.49 -0.33 51.07 16 17 C -0.62 -5.36 10.80 113.37 1.22 -4.13 16 18 O -0.98 -27.26 17.20 -127.65 -2.20 -29.45 16 19 O -0.98 -25.18 17.14 -127.65 -2.19 -27.37 16 20 C 0.24 6.90 10.63 84.62 0.90 7.80 16 21 N -0.58 -20.89 9.16 -193.26 -1.77 -22.67 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 23 H 0.07 2.50 7.45 -2.39 -0.02 2.48 16 24 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 25 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 26 H 0.03 1.34 6.37 -2.39 -0.02 1.32 16 27 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.13 5.58 6.22 -2.91 -0.02 5.56 16 29 H 0.16 4.28 7.66 -2.91 -0.02 4.26 16 30 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.19 4.28 7.57 -2.91 -0.02 4.25 16 Total: -1.00 -72.11 299.79 0.86 -71.25 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.12 Total: 7.79 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 6.10 Total: -17.06 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -3.67 Total: -101.00 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -4.38 Total: -56.82 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 51.40 SS G_CDS: -0.33 Total: 51.07 kcal Total: -72.11 0.86 -71.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309357071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.946 kcal (2) G-P(sol) polarization free energy of solvation -72.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds