Wall clock time and date at job start Mon Mar 30 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48503 * 109.46586 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47489 * 29.99351 * 3 2 1 6 6 H 1.48495 * 109.47395 * 149.99650 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 C 1.33635 * 126.03954 * 89.71672 * 12 11 10 14 14 N 1.31790 * 114.49713 * 179.79082 * 13 12 11 15 15 C 1.29027 * 117.12481 * 0.51351 * 14 13 12 16 16 C 1.50703 * 124.91380 * 179.68261 * 15 14 13 17 17 O 1.43749 * 109.63095 * 149.40727 * 16 15 14 18 18 C 1.44786 * 104.81645 * 215.80800 * 17 16 15 19 19 C 1.54911 * 101.72084 * 36.10387 * 18 17 16 20 20 O 1.43371 * 109.62988 * 30.04453 * 16 15 14 21 21 S 1.70975 * 110.16763 * 359.71801 * 15 14 13 22 22 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 25 25 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 26 26 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 27 27 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 28 28 H 1.07996 * 122.75079 * 359.97091 * 13 12 11 29 29 H 1.08997 * 109.62686 * 269.64959 * 16 15 14 30 30 H 1.08999 * 110.97786 * 277.99141 * 18 17 16 31 31 H 1.09002 * 111.00721 * 154.22540 * 18 17 16 32 32 H 1.08999 * 110.69680 * 206.04354 * 19 18 17 33 33 H 1.09001 * 110.84483 * 82.90710 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5148 -6.0260 0.0006 13 6 3.0446 -6.6062 1.0815 14 7 3.9056 -7.5687 0.8184 15 6 4.1390 -7.8257 -0.4243 16 6 5.0927 -8.8809 -0.9225 17 8 4.6294 -9.3944 -2.1827 18 6 4.9722 -10.8008 -2.1580 19 6 4.7392 -11.1554 -0.6681 20 8 5.1542 -9.9587 0.0209 21 16 3.2105 -6.7951 -1.4239 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5572 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8405 -3.5487 0.7819 26 1 0.8801 -4.9818 0.8897 27 1 0.8807 -4.9813 -0.8902 28 1 2.7862 -6.3126 2.0881 29 1 6.0848 -8.4475 -1.0487 30 1 6.0148 -10.9533 -2.4370 31 1 4.3093 -11.3761 -2.8043 32 1 5.3567 -12.0037 -0.3728 33 1 3.6860 -11.3632 -0.4790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309562673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:10 Heat of formation + Delta-G solvation = -35.545569 kcal Electronic energy + Delta-G solvation = -17574.562442 eV Core-core repulsion = 14534.666684 eV Total energy + Delta-G solvation = -3039.895759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77386 -39.34031 -35.60571 -35.39408 -32.78768 -31.57203 -29.92381 -27.59479 -26.01797 -23.99668 -23.76159 -22.78059 -21.46645 -19.37167 -18.40208 -17.57621 -16.86153 -16.49681 -15.99418 -15.35960 -14.85453 -14.67004 -14.50174 -14.24497 -13.87554 -13.55230 -13.20220 -13.08632 -12.93891 -12.14078 -11.95905 -11.88124 -11.30636 -10.96251 -10.75516 -10.69832 -10.69264 -10.35069 -10.04922 -9.41161 -9.28113 -9.02782 -8.73438 -8.51125 -7.42982 -6.06857 -4.09119 0.78179 1.40308 1.95100 2.87917 2.99876 3.31236 3.36940 3.41047 3.53994 4.14379 4.30592 4.40995 4.53072 4.65688 4.90219 5.03532 5.09479 5.14607 5.29040 5.29332 5.36302 5.45704 5.56617 5.96981 6.07119 6.28228 6.60632 7.13044 7.32727 7.71838 7.83334 8.05201 8.27771 8.50214 8.99469 9.55991 11.04247 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049317 B = 0.003222 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.613811 B = 8689.480033 C = 8755.159358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.129 3.871 12 C -0.190 4.190 13 C 0.020 3.980 14 N -0.440 5.440 15 C -0.019 4.019 16 C 0.321 3.679 17 O -0.371 6.371 18 C 0.018 3.982 19 C 0.017 3.983 20 O -0.357 6.357 21 S 0.190 5.810 22 H 0.262 0.738 23 H 0.030 0.970 24 H -0.010 1.010 25 H 0.333 0.667 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.175 0.825 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.289 -22.461 -3.388 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.316 5.316 11 C -0.003 4.003 12 C -0.312 4.312 13 C -0.132 4.132 14 N -0.156 5.156 15 C -0.297 4.297 16 C 0.222 3.778 17 O -0.291 6.291 18 C -0.058 4.058 19 C -0.060 4.060 20 O -0.277 6.277 21 S 0.444 5.556 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.008 0.992 25 H 0.150 0.850 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.192 0.808 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.353 -22.401 -4.725 24.370 hybrid contribution -0.188 1.068 1.792 2.094 sum 8.165 -21.333 -2.933 23.030 Atomic orbital electron populations 1.69955 1.06095 1.26912 1.50743 1.24986 0.94895 0.99417 0.95225 0.86455 0.79688 0.82845 0.78178 1.20562 1.21264 1.19799 1.21153 0.93572 0.90066 1.50605 0.91878 1.19602 0.90526 0.87070 0.96047 1.60777 1.21165 1.00237 1.49390 1.20315 0.91658 0.86852 1.01481 1.26392 1.05534 1.04156 0.95115 1.21702 0.96445 0.94739 1.00293 1.66083 1.15396 1.15806 1.18287 1.26924 1.05497 1.04062 0.93196 1.22029 0.93858 0.85598 0.76305 1.89268 1.82126 1.23069 1.34647 1.24472 1.02536 0.81352 0.97436 1.24279 1.01861 0.89025 0.90794 1.89050 1.87708 1.16096 1.34866 1.84062 1.34930 1.26600 1.09969 0.92831 0.95191 0.99246 0.85037 0.93617 0.90249 0.80797 0.86978 0.89971 0.86853 0.87770 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.57 9.32 -34.44 -0.32 -14.89 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.02 5.44 -4.97 -0.03 4.99 16 10 N -0.68 -14.64 6.48 -116.34 -0.75 -15.39 16 11 C 0.13 2.28 6.22 -4.98 -0.03 2.24 16 12 C -0.19 -3.05 6.11 -35.92 -0.22 -3.27 16 13 C 0.02 0.32 11.25 -19.18 -0.22 0.10 16 14 N -0.44 -7.17 10.36 -11.86 -0.12 -7.29 16 15 C -0.02 -0.29 6.95 -13.45 -0.09 -0.38 16 16 C 0.32 3.85 4.56 36.01 0.16 4.02 16 17 O -0.37 -3.98 10.95 -59.04 -0.65 -4.62 16 18 C 0.02 0.12 7.95 38.17 0.30 0.42 16 19 C 0.02 0.13 8.07 38.17 0.31 0.44 16 20 O -0.36 -4.30 11.07 -59.04 -0.65 -4.95 16 21 S 0.19 2.80 22.75 -107.50 -2.45 0.36 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16 25 H 0.33 6.89 8.72 -39.29 -0.34 6.55 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.18 2.41 8.06 -52.49 -0.42 1.98 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 303.26 15.07 4.57 4.57 Total: -1.00 -32.57 303.26 -8.68 -41.25 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.12 Total: 0.17 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.23 Total: -4.82 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.14 Total: -48.63 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.30 Total: -9.57 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.45 Total: 0.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.57 -8.68 -41.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309562673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.706 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds