Wall clock time and date at job start Mon Mar 30 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48503 * 109.46586 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47489 * 29.99351 * 3 2 1 6 6 H 1.48495 * 109.47395 * 149.99650 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 C 1.33635 * 126.03954 * 89.71672 * 12 11 10 14 14 N 1.31790 * 114.49713 * 179.79082 * 13 12 11 15 15 C 1.29027 * 117.12481 * 0.51351 * 14 13 12 16 16 C 1.50703 * 124.91380 * 179.68261 * 15 14 13 17 17 O 1.43749 * 109.63095 * 149.40727 * 16 15 14 18 18 C 1.44786 * 104.81645 * 215.80800 * 17 16 15 19 19 C 1.54911 * 101.72084 * 36.10387 * 18 17 16 20 20 O 1.43371 * 109.62988 * 30.04453 * 16 15 14 21 21 S 1.70975 * 110.16763 * 359.71801 * 15 14 13 22 22 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 24 24 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 25 25 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 26 26 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 27 27 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 28 28 H 1.07996 * 122.75079 * 359.97091 * 13 12 11 29 29 H 1.08997 * 109.62686 * 269.64959 * 16 15 14 30 30 H 1.08999 * 110.97786 * 277.99141 * 18 17 16 31 31 H 1.09002 * 111.00721 * 154.22540 * 18 17 16 32 32 H 1.08999 * 110.69680 * 206.04354 * 19 18 17 33 33 H 1.09001 * 110.84483 * 82.90710 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5148 -6.0260 0.0006 13 6 3.0446 -6.6062 1.0815 14 7 3.9056 -7.5687 0.8184 15 6 4.1390 -7.8257 -0.4243 16 6 5.0927 -8.8809 -0.9225 17 8 4.6294 -9.3944 -2.1827 18 6 4.9722 -10.8008 -2.1580 19 6 4.7392 -11.1554 -0.6681 20 8 5.1542 -9.9587 0.0209 21 16 3.2105 -6.7951 -1.4239 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5572 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8405 -3.5487 0.7819 26 1 0.8801 -4.9818 0.8897 27 1 0.8807 -4.9813 -0.8902 28 1 2.7862 -6.3126 2.0881 29 1 6.0848 -8.4475 -1.0487 30 1 6.0148 -10.9533 -2.4370 31 1 4.3093 -11.3761 -2.8043 32 1 5.3567 -12.0037 -0.3728 33 1 3.6860 -11.3632 -0.4790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309562673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:10 Heat of formation + Delta-G solvation = -60.182166 kcal Electronic energy + Delta-G solvation = -17575.630765 eV Core-core repulsion = 14534.666684 eV Total energy + Delta-G solvation = -3040.964082 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58280 -40.48211 -37.31715 -36.17375 -34.77022 -32.75340 -31.06921 -28.97986 -27.54972 -25.35902 -24.43866 -24.01726 -23.35196 -20.49147 -19.52548 -18.57951 -18.31351 -17.72624 -16.91997 -16.74593 -16.31027 -16.19879 -15.66272 -15.51607 -14.86796 -14.69917 -14.58064 -14.23307 -13.95628 -13.79232 -13.50952 -13.21534 -12.67665 -12.64572 -12.50458 -12.19315 -12.06570 -11.38455 -11.33133 -11.18756 -10.67756 -10.54042 -10.28463 -9.93448 -9.21294 -8.23803 -6.34746 -0.42078 0.24051 0.75967 1.41830 1.43197 1.54489 1.71240 2.21176 2.39893 2.72946 3.09996 3.38765 3.57382 3.63181 3.84663 3.95184 4.06995 4.13421 4.17464 4.23267 4.54800 4.59799 4.72746 4.74025 4.90661 5.03945 5.09202 5.22753 5.58460 5.86750 5.97734 6.35275 6.61296 6.65442 6.84279 7.35955 8.87680 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049317 B = 0.003222 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.613811 B = 8689.480033 C = 8755.159358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.685 5.685 11 C 0.135 3.865 12 C -0.212 4.212 13 C 0.026 3.974 14 N -0.465 5.465 15 C -0.013 4.013 16 C 0.319 3.681 17 O -0.388 6.388 18 C 0.017 3.983 19 C 0.010 3.990 20 O -0.381 6.381 21 S 0.204 5.796 22 H 0.266 0.734 23 H 0.005 0.995 24 H -0.031 1.031 25 H 0.337 0.663 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.188 0.812 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 -23.339 -3.834 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.316 5.316 11 C 0.004 3.996 12 C -0.334 4.334 13 C -0.127 4.127 14 N -0.181 5.181 15 C -0.290 4.290 16 C 0.220 3.780 17 O -0.308 6.308 18 C -0.058 4.058 19 C -0.066 4.066 20 O -0.302 6.302 21 S 0.458 5.542 22 H 0.075 0.925 23 H 0.023 0.977 24 H -0.013 1.013 25 H 0.155 0.845 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.205 0.795 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.844 -23.315 -5.180 25.832 hybrid contribution -0.633 1.160 1.899 2.313 sum 9.210 -22.155 -3.281 24.216 Atomic orbital electron populations 1.70072 1.07718 1.28090 1.51374 1.25917 0.95790 1.03284 0.94530 0.85338 0.78513 0.78028 0.78461 1.19863 1.20617 1.18853 1.21510 0.93792 0.91376 1.50825 0.91874 1.19242 0.90521 0.88304 0.93828 1.60620 1.20544 1.00709 1.49710 1.20203 0.92015 0.85589 1.01769 1.26135 1.06449 1.04637 0.96175 1.21948 0.95718 0.94154 1.00860 1.66163 1.16294 1.16518 1.19126 1.27608 1.04686 1.03934 0.92804 1.22159 0.93554 0.85428 0.76838 1.89250 1.82443 1.25376 1.33732 1.24788 1.04559 0.79338 0.97110 1.24564 1.02287 0.88415 0.91329 1.89028 1.87826 1.17369 1.35932 1.83970 1.34611 1.26289 1.09282 0.92527 0.97651 1.01299 0.84534 0.92838 0.90464 0.79527 0.85473 0.87744 0.84544 0.84908 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.60 9.32 25.60 0.24 -30.36 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.06 5.44 85.55 0.47 11.53 16 10 N -0.68 -29.57 6.48 -521.98 -3.38 -32.95 16 11 C 0.14 4.82 6.22 85.56 0.53 5.35 16 12 C -0.21 -6.75 6.11 24.64 0.15 -6.59 16 13 C 0.03 0.79 11.25 83.65 0.94 1.73 16 14 N -0.46 -14.79 10.36 -191.45 -1.98 -16.77 16 15 C -0.01 -0.36 6.95 88.52 0.62 0.25 16 16 C 0.32 7.18 4.56 71.24 0.32 7.50 16 17 O -0.39 -7.55 10.95 -126.22 -1.38 -8.93 16 18 C 0.02 0.17 7.95 72.64 0.58 0.75 16 19 C 0.01 0.12 8.07 72.64 0.59 0.71 16 20 O -0.38 -8.57 11.07 -126.22 -1.40 -9.96 16 21 S 0.20 5.86 22.75 -56.49 -1.29 4.58 16 22 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 23 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 24 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 25 H 0.34 14.02 8.72 -89.69 -0.78 13.24 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.19 5.04 8.06 -2.91 -0.02 5.02 16 29 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -69.48 303.26 -1.88 -71.36 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.35 Total: 10.58 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 4.89 Total: -8.49 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -5.08 Total: -105.44 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -2.78 Total: -18.90 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -1.29 Total: 4.58 kcal Total: -69.48 -1.88 -71.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309562673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.180 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds