Wall clock time and date at job start Mon Mar 30 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46607 * 2 1 4 4 C 1.50695 * 109.47123 * 239.99876 * 2 1 3 5 5 H 1.08003 * 120.00049 * 239.99783 * 4 2 1 6 6 C 1.37885 * 120.00055 * 60.00178 * 4 2 1 7 7 N 1.31510 * 120.00088 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99766 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47609 * 59.99588 * 8 6 4 10 10 H 1.48499 * 109.46730 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46906 * 299.99393 * 8 6 4 12 12 N 1.46495 * 109.47020 * 119.99880 * 2 1 3 13 13 C 1.39008 * 119.99962 * 274.99700 * 12 2 1 14 14 C 1.39137 * 119.70204 * 0.02562 * 13 12 2 15 15 C 1.38307 * 119.09401 * 179.97438 * 14 13 12 16 16 C 1.38885 * 118.50297 * 0.25392 * 15 14 13 17 17 S 1.76202 * 120.33269 * 179.72542 * 16 15 14 18 18 C 1.81401 * 104.44980 * 89.99553 * 17 16 15 19 19 O 1.42092 * 104.27936 * 206.06749 * 17 16 15 20 20 O 1.42107 * 104.27590 * 333.92757 * 17 16 15 21 21 C 1.38014 * 119.32950 * 359.47506 * 16 15 14 22 22 N 1.31971 * 120.86181 * 0.53565 * 21 16 15 23 23 H 1.08994 * 109.47561 * 299.99933 * 1 2 3 24 24 H 1.09002 * 109.47550 * 60.00566 * 1 2 3 25 25 H 1.09008 * 109.47028 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00015 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00089 * 95.00417 * 12 2 1 28 28 H 1.07999 * 120.45618 * 359.97321 * 14 13 12 29 29 H 1.08002 * 120.74429 * 179.97438 * 15 14 13 30 30 H 1.08993 * 109.47035 * 60.00254 * 18 17 16 31 31 H 1.08998 * 109.47229 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.46984 * 300.00031 * 18 17 16 33 33 H 1.08008 * 119.57374 * 180.25843 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0183 -0.6906 1.1961 13 6 2.1511 0.0029 2.3935 14 6 1.8180 1.3527 2.4491 15 6 1.9544 2.0303 3.6470 16 6 2.4263 1.3341 4.7523 17 16 2.6257 2.1517 6.3003 18 6 1.0290 1.9375 7.1343 19 8 3.6380 1.4063 6.9626 20 8 2.8280 3.5148 5.9533 21 6 2.7326 -0.0057 4.6270 22 7 2.5925 -0.6270 3.4711 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1608 -3.4845 27 1 2.2490 -1.6317 1.1526 28 1 1.4578 1.8643 1.5688 29 1 1.7040 3.0784 3.7202 30 1 0.8241 0.8743 7.2591 31 1 1.0622 2.4187 8.1117 32 1 0.2413 2.3913 6.5329 33 1 3.0959 -0.5520 5.4850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309589729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:43 Heat of formation + Delta-G solvation = -33.040074 kcal Electronic energy + Delta-G solvation = -18209.611458 eV Core-core repulsion = 15169.824345 eV Total energy + Delta-G solvation = -3039.787112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85962 -36.99701 -36.17181 -35.82317 -33.10536 -32.16412 -30.25286 -29.56113 -28.16643 -25.47512 -23.57314 -22.85080 -20.61087 -18.90950 -17.93117 -17.32487 -16.43671 -16.12951 -16.11167 -15.35954 -14.87742 -14.37160 -14.02459 -13.61352 -13.51962 -13.28487 -12.96922 -12.78844 -12.54896 -12.17318 -12.00657 -11.87779 -11.40557 -11.23234 -11.10952 -10.97039 -10.76800 -10.50154 -10.36378 -10.07206 -9.46465 -9.33937 -9.15251 -8.67854 -7.34263 -6.33205 -4.42505 0.17899 1.29722 1.65018 3.02972 3.16323 3.21612 3.23340 3.77706 3.82588 4.17466 4.20734 4.23397 4.67644 4.85397 4.87775 5.00639 5.09510 5.45144 5.51126 5.60924 6.02155 6.17483 6.22503 6.46970 6.65866 6.73616 6.83598 7.14961 7.46970 7.49815 7.66295 7.87927 8.29409 8.43040 8.68903 9.25612 10.73036 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045716 B = 0.003920 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.331272 B = 7140.340639 C = 7299.737739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.678 5.678 13 C 0.450 3.550 14 C -0.255 4.255 15 C 0.049 3.951 16 C -0.801 4.801 17 S 2.519 3.481 18 C -0.654 4.654 19 O -0.949 6.949 20 O -0.948 6.948 21 C 0.250 3.750 22 N -0.569 5.569 23 H 0.015 0.985 24 H 0.096 0.904 25 H 0.033 0.967 26 H 0.268 0.732 27 H 0.400 0.600 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 1.836 14.582 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.298 5.298 13 C 0.209 3.791 14 C -0.281 4.281 15 C 0.024 3.976 16 C -0.896 4.896 17 S 2.699 3.301 18 C -0.803 4.803 19 O -0.946 6.946 20 O -0.945 6.945 21 C 0.085 3.915 22 N -0.288 5.288 23 H 0.034 0.966 24 H 0.114 0.886 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.235 0.765 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.466 1.587 14.302 14.464 hybrid contribution -0.586 -0.407 -1.272 1.458 sum -2.052 1.180 13.030 13.243 Atomic orbital electron populations 1.22213 0.97926 1.00068 1.01049 1.19022 0.91257 0.93743 0.79875 0.93440 1.21095 1.32944 1.13665 0.89873 0.91807 1.24861 0.94525 0.94903 0.99153 1.69839 1.35528 1.22359 1.24452 0.86418 0.79301 0.79618 0.81326 1.20023 1.20963 1.20008 1.45906 1.64054 1.13176 1.06675 1.18944 0.84843 0.88809 0.86505 1.21635 1.11725 0.94578 1.00170 1.20886 0.87498 0.98676 0.90570 1.30582 1.29550 1.08352 1.21140 1.04399 0.76590 0.74373 0.74729 1.30278 1.24083 1.11962 1.14009 1.93544 1.53068 1.72884 1.75086 1.93549 1.84600 1.33355 1.82983 1.22071 0.85898 0.89177 0.94386 1.67374 1.22749 1.39375 0.99346 0.96611 0.88573 0.94804 0.92231 0.76514 0.83734 0.84021 0.85246 0.85681 0.85242 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.18 37.16 0.34 -3.04 16 2 C 0.26 6.00 2.25 -69.09 -0.16 5.85 16 3 H 0.05 1.17 6.45 -51.93 -0.33 0.83 16 4 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.06 11.32 55.43 0.63 -22.43 16 8 Si 0.91 19.87 29.54 -169.99 -5.02 14.84 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 N -0.68 -13.77 5.24 -55.06 -0.29 -14.05 16 13 C 0.45 8.61 7.63 -155.01 -1.18 7.43 16 14 C -0.25 -4.52 8.83 -39.22 -0.35 -4.87 16 15 C 0.05 0.74 9.59 -39.32 -0.38 0.36 16 16 C -0.80 -11.04 5.67 -39.42 -0.22 -11.27 16 17 S 2.52 27.49 5.81 -107.50 -0.62 26.87 16 18 C -0.65 -4.26 10.80 101.05 1.09 -3.17 16 19 O -0.95 -12.94 17.15 -57.54 -0.99 -13.92 16 20 O -0.95 -13.34 17.20 -57.54 -0.99 -14.33 16 21 C 0.25 3.75 10.62 -17.57 -0.19 3.56 16 22 N -0.57 -10.22 10.39 -12.44 -0.13 -10.35 16 23 H 0.01 0.30 7.66 -51.93 -0.40 -0.10 16 24 H 0.10 2.31 6.07 -51.93 -0.32 1.99 16 25 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 26 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.40 7.82 8.66 -40.82 -0.35 7.46 16 28 H 0.14 2.62 6.07 -52.49 -0.32 2.30 16 29 H 0.14 1.76 7.66 -52.49 -0.40 1.36 16 30 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.16 1.95 7.58 -52.48 -0.40 1.55 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -31.08 295.32 -8.15 -39.23 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.75 Total: 6.96 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.43 Total: -17.27 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.21 Total: -46.84 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.98 Total: -28.25 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 27.49 SS G_CDS: -0.62 Total: 26.87 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.08 -8.15 -39.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309589729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.192 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds