Wall clock time and date at job start Mon Mar 30 2020 01:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46607 * 2 1 4 4 C 1.50695 * 109.47123 * 239.99876 * 2 1 3 5 5 H 1.08003 * 120.00049 * 239.99783 * 4 2 1 6 6 C 1.37885 * 120.00055 * 60.00178 * 4 2 1 7 7 N 1.31510 * 120.00088 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99766 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47609 * 59.99588 * 8 6 4 10 10 H 1.48499 * 109.46730 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46906 * 299.99393 * 8 6 4 12 12 N 1.46495 * 109.47020 * 119.99880 * 2 1 3 13 13 C 1.39008 * 119.99962 * 274.99700 * 12 2 1 14 14 C 1.39137 * 119.70204 * 0.02562 * 13 12 2 15 15 C 1.38307 * 119.09401 * 179.97438 * 14 13 12 16 16 C 1.38885 * 118.50297 * 0.25392 * 15 14 13 17 17 S 1.76202 * 120.33269 * 179.72542 * 16 15 14 18 18 C 1.81401 * 104.44980 * 89.99553 * 17 16 15 19 19 O 1.42092 * 104.27936 * 206.06749 * 17 16 15 20 20 O 1.42107 * 104.27590 * 333.92757 * 17 16 15 21 21 C 1.38014 * 119.32950 * 359.47506 * 16 15 14 22 22 N 1.31971 * 120.86181 * 0.53565 * 21 16 15 23 23 H 1.08994 * 109.47561 * 299.99933 * 1 2 3 24 24 H 1.09002 * 109.47550 * 60.00566 * 1 2 3 25 25 H 1.09008 * 109.47028 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00015 * 180.02562 * 7 6 4 27 27 H 0.96999 * 120.00089 * 95.00417 * 12 2 1 28 28 H 1.07999 * 120.45618 * 359.97321 * 14 13 12 29 29 H 1.08002 * 120.74429 * 179.97438 * 15 14 13 30 30 H 1.08993 * 109.47035 * 60.00254 * 18 17 16 31 31 H 1.08998 * 109.47229 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.46984 * 300.00031 * 18 17 16 33 33 H 1.08008 * 119.57374 * 180.25843 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8296 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0183 -0.6906 1.1961 13 6 2.1511 0.0029 2.3935 14 6 1.8180 1.3527 2.4491 15 6 1.9544 2.0303 3.6470 16 6 2.4263 1.3341 4.7523 17 16 2.6257 2.1517 6.3003 18 6 1.0290 1.9375 7.1343 19 8 3.6380 1.4063 6.9626 20 8 2.8280 3.5148 5.9533 21 6 2.7326 -0.0057 4.6270 22 7 2.5925 -0.6270 3.4711 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1608 -3.4845 27 1 2.2490 -1.6317 1.1526 28 1 1.4578 1.8643 1.5688 29 1 1.7040 3.0784 3.7202 30 1 0.8241 0.8743 7.2591 31 1 1.0622 2.4187 8.1117 32 1 0.2413 2.3913 6.5329 33 1 3.0959 -0.5520 5.4850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309589729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:42 Heat of formation + Delta-G solvation = -56.028649 kcal Electronic energy + Delta-G solvation = -18210.608317 eV Core-core repulsion = 15169.824345 eV Total energy + Delta-G solvation = -3040.783972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19275 -37.99533 -37.75432 -36.82975 -34.83119 -33.51801 -31.77181 -30.22915 -29.63348 -27.37269 -24.89843 -24.22918 -22.26396 -19.91393 -19.37969 -18.55619 -17.82031 -17.66989 -17.01260 -16.74965 -16.25675 -15.79389 -15.43040 -15.17683 -14.39698 -14.30138 -14.03693 -13.89040 -13.81856 -13.76660 -13.14427 -13.01579 -12.96083 -12.88844 -12.77598 -12.37033 -12.20840 -12.08648 -11.71346 -11.46413 -11.14613 -10.85139 -10.58105 -10.47496 -8.80779 -8.25257 -6.40762 -0.67278 0.03252 0.36131 1.42384 1.42684 1.50573 2.07094 2.25561 2.47601 2.68402 3.06017 3.20847 3.32993 3.62457 3.91832 4.08905 4.19664 4.23057 4.49663 4.60131 4.79727 4.89183 4.91432 4.92720 5.00476 5.07152 5.30445 5.50475 5.62501 5.78733 5.94455 6.12428 6.61932 6.77410 7.11772 7.32128 8.79998 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045716 B = 0.003920 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.331272 B = 7140.340639 C = 7299.737739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.555 4.555 5 H 0.061 0.939 6 C 0.026 3.974 7 N -0.908 5.908 8 Si 0.965 3.035 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.275 1.275 12 N -0.691 5.691 13 C 0.430 3.570 14 C -0.277 4.277 15 C 0.055 3.945 16 C -0.791 4.791 17 S 2.534 3.466 18 C -0.625 4.625 19 O -0.977 6.977 20 O -0.981 6.981 21 C 0.238 3.762 22 N -0.585 5.585 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.269 0.731 27 H 0.400 0.600 28 H 0.132 0.868 29 H 0.168 0.832 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 1.940 16.753 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.593 4.593 5 H 0.079 0.921 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.313 5.313 13 C 0.191 3.809 14 C -0.303 4.303 15 C 0.030 3.970 16 C -0.883 4.883 17 S 2.715 3.285 18 C -0.779 4.779 19 O -0.974 6.974 20 O -0.978 6.978 21 C 0.074 3.926 22 N -0.304 5.304 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.235 0.765 28 H 0.150 0.850 29 H 0.185 0.815 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.006 1.685 16.471 16.678 hybrid contribution -0.411 -0.347 -1.674 1.758 sum -2.417 1.338 14.797 15.053 Atomic orbital electron populations 1.22012 0.97521 0.99686 1.00630 1.18652 0.91463 0.92423 0.80420 0.95866 1.21425 1.33011 1.13774 0.91129 0.92098 1.25592 0.94713 0.95548 1.01676 1.69948 1.36318 1.23354 1.24946 0.85500 0.78561 0.78735 0.78187 1.19471 1.20561 1.20022 1.45541 1.66097 1.13038 1.06667 1.19064 0.85997 0.89304 0.86522 1.21662 1.13177 0.94447 1.01025 1.21240 0.86231 0.99796 0.89780 1.31164 1.26534 1.07845 1.22724 1.04134 0.78218 0.72771 0.73405 1.30040 1.19079 1.14243 1.14561 1.93510 1.56228 1.73086 1.74595 1.93511 1.86240 1.34706 1.83355 1.22652 0.85548 0.90134 0.94229 1.67359 1.23009 1.40176 0.99865 0.95100 0.90729 0.95006 0.92214 0.76548 0.85020 0.81503 0.83034 0.82719 0.83344 0.79035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.31 9.18 71.98 0.66 -5.65 16 2 C 0.27 12.96 2.25 44.24 0.10 13.06 16 3 H 0.02 1.21 6.45 -2.39 -0.02 1.20 16 4 C -0.56 -28.58 8.73 25.60 0.22 -28.36 16 5 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 6 C 0.03 1.34 5.30 84.66 0.45 1.79 16 7 N -0.91 -48.34 11.32 21.45 0.24 -48.09 16 8 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.69 -29.01 5.24 -328.11 -1.72 -30.73 16 13 C 0.43 16.73 7.63 133.06 1.02 17.75 16 14 C -0.28 -9.96 8.83 22.50 0.20 -9.76 16 15 C 0.06 1.58 9.59 22.44 0.22 1.80 16 16 C -0.79 -20.24 5.67 22.37 0.13 -20.11 16 17 S 2.53 47.75 5.81 -56.49 -0.33 47.43 16 18 C -0.63 -4.75 10.80 113.37 1.22 -3.52 16 19 O -0.98 -24.23 17.15 -127.65 -2.19 -26.42 16 20 O -0.98 -25.38 17.20 -127.65 -2.20 -27.57 16 21 C 0.24 6.75 10.62 84.62 0.90 7.65 16 22 N -0.58 -20.83 10.39 -193.26 -2.01 -22.84 16 23 H 0.03 1.24 7.66 -2.39 -0.02 1.23 16 24 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 27 H 0.40 16.23 8.66 -92.71 -0.80 15.43 16 28 H 0.13 5.00 6.07 -2.91 -0.02 4.99 16 29 H 0.17 3.84 7.66 -2.91 -0.02 3.82 16 30 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.19 4.15 7.58 -2.91 -0.02 4.13 16 Total: -1.00 -68.46 295.32 -0.72 -69.19 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.34 Total: 21.32 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 5.11 Total: -25.36 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.48 Total: -101.66 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -4.38 Total: -53.99 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 47.75 SS G_CDS: -0.33 Total: 47.43 kcal Total: -68.46 -0.72 -69.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309589729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.156 kcal (2) G-P(sol) polarization free energy of solvation -68.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds