Wall clock time and date at job start Mon Mar 30 2020 02:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42096 * 110.54513 * 2 1 4 4 O 1.42098 * 110.54610 * 223.24267 * 2 1 3 5 5 C 1.76199 * 104.44682 * 111.62161 * 2 1 3 6 6 C 1.38348 * 120.45037 * 114.97750 * 5 2 1 7 7 C 1.38841 * 118.50618 * 180.02562 * 6 5 2 8 8 C 1.38070 * 119.32617 * 0.02562 * 7 6 5 9 9 N 1.31944 * 120.85599 * 359.97438 * 8 7 6 10 10 C 1.32426 * 121.62229 * 0.02562 * 9 8 7 11 11 N 1.39009 * 119.70288 * 179.97438 * 10 9 8 12 12 C 1.46498 * 119.99936 * 0.02562 * 11 10 9 13 13 C 1.53001 * 109.47190 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47437 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99951 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99536 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00329 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46675 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47576 * 119.99372 * 18 16 14 21 21 H 1.48502 * 109.47115 * 239.99790 * 18 16 14 22 22 H 1.09006 * 109.47274 * 308.37824 * 1 2 3 23 23 H 1.09005 * 109.47114 * 68.37682 * 1 2 3 24 24 H 1.08998 * 109.47636 * 188.37997 * 1 2 3 25 25 H 1.07995 * 120.74822 * 359.97438 * 6 5 2 26 26 H 1.07999 * 120.34023 * 180.02562 * 7 6 5 27 27 H 1.08006 * 119.57149 * 180.27122 * 8 7 6 28 28 H 0.96997 * 119.99429 * 180.02562 * 11 10 9 29 29 H 1.08996 * 109.47165 * 299.99562 * 12 11 10 30 30 H 1.09000 * 109.47549 * 59.99631 * 12 11 10 31 31 H 1.09001 * 109.46740 * 300.00342 * 13 12 11 32 32 H 1.09000 * 109.47141 * 59.99424 * 13 12 11 33 33 H 0.97000 * 119.99815 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2535 -0.6287 1.5862 6 6 2.9161 -1.8376 1.7022 7 6 3.2426 -2.2952 2.9718 8 6 2.8988 -1.5367 4.0731 9 7 2.2667 -0.3871 3.9324 10 6 1.9381 0.0831 2.7388 11 7 1.2720 1.2990 2.6370 12 6 0.9372 2.0543 3.8467 13 6 0.2134 3.3451 3.4581 14 6 -0.1305 4.1224 4.7023 15 1 0.1397 3.7344 5.6734 16 6 -0.7911 5.3284 4.6013 17 7 -1.1206 5.8005 3.4189 18 14 -1.2181 6.2917 6.1438 19 1 -0.7419 5.5493 7.3386 20 1 -0.5619 7.6229 6.0937 21 1 -2.6903 6.4682 6.2255 22 1 -0.3634 0.6381 0.8056 23 1 -0.3633 0.3787 -0.9554 24 1 -0.3634 -1.0166 0.1498 25 1 3.1729 -2.4129 0.8251 26 1 3.7602 -3.2348 3.0967 27 1 3.1547 -1.8867 5.0623 28 1 1.0290 1.6471 1.7649 29 1 0.2895 1.4519 4.4836 30 1 1.8517 2.2995 4.3868 31 1 0.8614 3.9473 2.8213 32 1 -0.7011 3.1003 2.9177 33 1 -1.5850 6.6492 3.3478 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309928025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:18 Heat of formation + Delta-G solvation = -32.822981 kcal Electronic energy + Delta-G solvation = -18457.244082 eV Core-core repulsion = 15417.466383 eV Total energy + Delta-G solvation = -3039.777698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18359 -37.29916 -36.00157 -35.93104 -33.22913 -32.54399 -30.96795 -29.62187 -28.49772 -24.92985 -24.04310 -22.42528 -20.98029 -19.14015 -17.99444 -17.35216 -16.84737 -16.20970 -16.11445 -15.44866 -14.91961 -14.76505 -14.47368 -14.01286 -13.52108 -13.39931 -13.32976 -13.20431 -12.76744 -12.29040 -12.10039 -11.98806 -11.29957 -11.24949 -11.22869 -10.97046 -10.76436 -10.63647 -10.14339 -9.80883 -9.66611 -9.44451 -9.25626 -8.47322 -7.78011 -6.11782 -4.15179 0.01674 0.84197 1.47269 2.83765 3.26456 3.29066 3.34945 3.39939 3.59525 3.86082 4.12057 4.37995 4.56976 4.68105 4.68744 4.86892 5.16451 5.25330 5.27822 5.46694 5.56391 5.75088 6.01103 6.16407 6.27539 6.50331 6.67991 7.12550 7.36003 7.53183 7.58642 7.86269 8.14484 8.28531 8.90583 9.49720 10.99958 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024923 B = 0.004988 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.202013 B = 5611.946240 C = 6517.311309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.502 3.498 3 O -0.932 6.932 4 O -0.945 6.945 5 C -0.791 4.791 6 C 0.064 3.936 7 C -0.270 4.270 8 C 0.205 3.795 9 N -0.543 5.543 10 C 0.487 3.513 11 N -0.707 5.707 12 C 0.127 3.873 13 C 0.006 3.994 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.133 0.867 23 H 0.136 0.864 24 H 0.134 0.866 25 H 0.149 0.851 26 H 0.136 0.864 27 H 0.160 0.840 28 H 0.404 0.596 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -16.371 -4.807 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.682 3.318 3 O -0.928 6.928 4 O -0.942 6.942 5 C -0.886 4.886 6 C 0.038 3.962 7 C -0.294 4.294 8 C 0.042 3.958 9 N -0.262 5.262 10 C 0.245 3.755 11 N -0.335 5.335 12 C 0.005 3.995 13 C -0.031 4.031 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.151 0.849 23 H 0.154 0.846 24 H 0.152 0.848 25 H 0.167 0.833 26 H 0.154 0.846 27 H 0.177 0.823 28 H 0.242 0.758 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.543 -15.255 -4.643 16.581 hybrid contribution -0.616 -0.028 0.490 0.787 sum 3.927 -15.283 -4.153 16.317 Atomic orbital electron populations 1.30318 1.25813 1.12313 1.12289 1.05014 0.77818 0.74820 0.74192 1.93635 1.77002 1.36146 1.86058 1.93527 1.77645 1.61803 1.61252 1.30464 1.27013 1.11127 1.20038 1.21056 0.86231 0.90240 0.98693 1.21826 1.10274 1.03915 0.93345 1.22807 0.86586 0.87182 0.99188 1.67419 1.18802 1.15849 1.24096 1.17863 0.84396 0.85048 0.88162 1.45802 1.57811 1.17835 1.12030 1.21862 0.99839 0.93536 0.84257 1.19401 0.95459 0.90106 0.98155 1.21026 1.37660 1.04709 0.92535 0.92094 1.25006 0.95598 0.97462 0.96240 1.69968 1.40241 1.20172 1.22724 0.86443 0.78045 0.79874 0.83103 1.19590 1.20894 1.20957 0.84889 0.84581 0.84753 0.83328 0.84564 0.82276 0.75754 0.91949 0.91924 0.95460 0.96002 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.21 10.57 101.05 1.07 -5.14 16 2 S 2.50 32.16 5.17 -107.50 -0.56 31.61 16 3 O -0.93 -15.60 16.31 -57.54 -0.94 -16.54 16 4 O -0.95 -13.30 16.82 -57.54 -0.97 -14.27 16 5 C -0.79 -11.11 5.61 -39.22 -0.22 -11.33 16 6 C 0.06 0.77 9.61 -39.32 -0.38 0.39 16 7 C -0.27 -2.90 10.10 -39.42 -0.40 -3.30 16 8 C 0.20 2.50 11.17 -17.57 -0.20 2.31 16 9 N -0.54 -8.82 9.57 -12.43 -0.12 -8.94 16 10 C 0.49 8.07 7.43 -155.01 -1.15 6.92 16 11 N -0.71 -12.77 5.20 -60.43 -0.31 -13.09 16 12 C 0.13 2.64 5.63 -4.04 -0.02 2.61 16 13 C 0.01 0.15 5.09 -27.89 -0.14 0.01 16 14 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 18 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.13 1.38 6.62 -51.92 -0.34 1.04 16 23 H 0.14 0.99 8.14 -51.92 -0.42 0.57 16 24 H 0.13 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.15 1.47 7.31 -52.49 -0.38 1.09 16 26 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 28 H 0.40 6.88 4.57 -40.82 -0.19 6.70 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -34.63 296.52 -8.40 -43.03 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.84 Total: 3.45 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -1.85 Total: -20.56 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.30 Total: -47.35 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.91 Total: -30.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 32.16 SS G_CDS: -0.56 Total: 31.61 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.63 -8.40 -43.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309928025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.210 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds