Wall clock time and date at job start Mon Mar 30 2020 02:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42096 * 110.54513 * 2 1 4 4 O 1.42098 * 110.54610 * 223.24267 * 2 1 3 5 5 C 1.76199 * 104.44682 * 111.62161 * 2 1 3 6 6 C 1.38348 * 120.45037 * 114.97750 * 5 2 1 7 7 C 1.38841 * 118.50618 * 180.02562 * 6 5 2 8 8 C 1.38070 * 119.32617 * 0.02562 * 7 6 5 9 9 N 1.31944 * 120.85599 * 359.97438 * 8 7 6 10 10 C 1.32426 * 121.62229 * 0.02562 * 9 8 7 11 11 N 1.39009 * 119.70288 * 179.97438 * 10 9 8 12 12 C 1.46498 * 119.99936 * 0.02562 * 11 10 9 13 13 C 1.53001 * 109.47190 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47437 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99951 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99536 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00329 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46675 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47576 * 119.99372 * 18 16 14 21 21 H 1.48502 * 109.47115 * 239.99790 * 18 16 14 22 22 H 1.09006 * 109.47274 * 308.37824 * 1 2 3 23 23 H 1.09005 * 109.47114 * 68.37682 * 1 2 3 24 24 H 1.08998 * 109.47636 * 188.37997 * 1 2 3 25 25 H 1.07995 * 120.74822 * 359.97438 * 6 5 2 26 26 H 1.07999 * 120.34023 * 180.02562 * 7 6 5 27 27 H 1.08006 * 119.57149 * 180.27122 * 8 7 6 28 28 H 0.96997 * 119.99429 * 180.02562 * 11 10 9 29 29 H 1.08996 * 109.47165 * 299.99562 * 12 11 10 30 30 H 1.09000 * 109.47549 * 59.99631 * 12 11 10 31 31 H 1.09001 * 109.46740 * 300.00342 * 13 12 11 32 32 H 1.09000 * 109.47141 * 59.99424 * 13 12 11 33 33 H 0.97000 * 119.99815 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2535 -0.6287 1.5862 6 6 2.9161 -1.8376 1.7022 7 6 3.2426 -2.2952 2.9718 8 6 2.8988 -1.5367 4.0731 9 7 2.2667 -0.3871 3.9324 10 6 1.9381 0.0831 2.7388 11 7 1.2720 1.2990 2.6370 12 6 0.9372 2.0543 3.8467 13 6 0.2134 3.3451 3.4581 14 6 -0.1305 4.1224 4.7023 15 1 0.1397 3.7344 5.6734 16 6 -0.7911 5.3284 4.6013 17 7 -1.1206 5.8005 3.4189 18 14 -1.2181 6.2917 6.1438 19 1 -0.7419 5.5493 7.3386 20 1 -0.5619 7.6229 6.0937 21 1 -2.6903 6.4682 6.2255 22 1 -0.3634 0.6381 0.8056 23 1 -0.3633 0.3787 -0.9554 24 1 -0.3634 -1.0166 0.1498 25 1 3.1729 -2.4129 0.8251 26 1 3.7602 -3.2348 3.0967 27 1 3.1547 -1.8867 5.0623 28 1 1.0290 1.6471 1.7649 29 1 0.2895 1.4519 4.4836 30 1 1.8517 2.2995 4.3868 31 1 0.8614 3.9473 2.8213 32 1 -0.7011 3.1003 2.9177 33 1 -1.5850 6.6492 3.3478 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309928025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:17 Heat of formation + Delta-G solvation = -58.496286 kcal Electronic energy + Delta-G solvation = -18458.357360 eV Core-core repulsion = 15417.466383 eV Total energy + Delta-G solvation = -3040.890977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27114 -38.43018 -37.35082 -37.08329 -35.15900 -33.58242 -32.55696 -30.44304 -29.97977 -26.68036 -25.15129 -23.74997 -22.65312 -20.19880 -19.20930 -18.55467 -18.30304 -17.68704 -17.21647 -16.54006 -16.48388 -16.17658 -15.83509 -15.37918 -14.87207 -14.56079 -14.19569 -14.15409 -14.05484 -13.71253 -13.26248 -13.21073 -13.06774 -13.04227 -12.49504 -12.47704 -12.31870 -11.94522 -11.60484 -11.39633 -11.24274 -11.18336 -10.59178 -10.44262 -9.00626 -8.24348 -6.35481 -0.95051 -0.17401 0.44212 1.41399 1.42247 1.55481 1.83402 2.04479 2.42253 2.59639 2.85787 3.10612 3.13290 3.53798 3.77306 3.97098 4.03937 4.22535 4.26926 4.48218 4.51175 4.55333 4.82386 4.84963 4.87633 5.10756 5.32898 5.54022 5.55780 5.73492 5.90770 6.11753 6.19273 6.78562 7.08061 7.34108 8.88336 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024923 B = 0.004988 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.202013 B = 5611.946240 C = 6517.311309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.508 3.492 3 O -0.980 6.980 4 O -0.959 6.959 5 C -0.793 4.793 6 C 0.053 3.947 7 C -0.248 4.248 8 C 0.191 3.809 9 N -0.577 5.577 10 C 0.464 3.536 11 N -0.721 5.721 12 C 0.152 3.848 13 C 0.013 3.987 14 C -0.541 4.541 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.969 3.031 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.276 1.276 22 H 0.125 0.875 23 H 0.162 0.838 24 H 0.164 0.836 25 H 0.172 0.828 26 H 0.179 0.821 27 H 0.195 0.805 28 H 0.405 0.595 29 H 0.064 0.936 30 H 0.049 0.951 31 H -0.001 1.001 32 H 0.010 0.990 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -18.431 -4.057 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.690 3.310 3 O -0.977 6.977 4 O -0.957 6.957 5 C -0.888 4.888 6 C 0.027 3.973 7 C -0.271 4.271 8 C 0.032 3.968 9 N -0.296 5.296 10 C 0.225 3.775 11 N -0.352 5.352 12 C 0.029 3.971 13 C -0.025 4.025 14 C -0.580 4.580 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.202 1.202 22 H 0.143 0.857 23 H 0.180 0.820 24 H 0.183 0.817 25 H 0.189 0.811 26 H 0.196 0.804 27 H 0.211 0.789 28 H 0.244 0.756 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.028 0.972 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.590 -17.380 -3.884 18.390 hybrid contribution -0.565 0.444 0.211 0.749 sum 4.025 -16.935 -3.673 17.790 Atomic orbital electron populations 1.30191 1.21256 1.14370 1.13553 1.04701 0.79371 0.73417 0.73496 1.93578 1.79210 1.38385 1.86529 1.93498 1.79109 1.61646 1.61399 1.30576 1.27129 1.11605 1.19467 1.21504 0.85757 0.89714 1.00355 1.22322 1.07991 1.04634 0.92127 1.23492 0.85732 0.86122 1.01491 1.67391 1.20058 1.17841 1.24337 1.18003 0.85382 0.84827 0.89329 1.45496 1.59899 1.18943 1.10860 1.21277 0.98566 0.91970 0.85284 1.19235 0.94721 0.91627 0.96894 1.21452 1.37663 1.05391 0.93454 0.91696 1.25937 0.95392 0.98559 0.99556 1.70090 1.41043 1.20768 1.25010 0.85336 0.77969 0.78166 0.79187 1.18547 1.20545 1.20164 0.85670 0.81965 0.81737 0.81089 0.80362 0.78864 0.75634 0.91816 0.93224 0.98308 0.97173 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -11.07 10.57 113.37 1.20 -9.88 16 2 S 2.51 63.56 5.17 -56.49 -0.29 63.26 16 3 O -0.98 -34.07 16.31 -127.65 -2.08 -36.15 16 4 O -0.96 -25.95 16.82 -127.65 -2.15 -28.09 16 5 C -0.79 -21.62 5.61 22.50 0.13 -21.50 16 6 C 0.05 1.14 9.61 22.44 0.22 1.36 16 7 C -0.25 -4.44 10.10 22.37 0.23 -4.21 16 8 C 0.19 4.21 11.17 84.64 0.95 5.15 16 9 N -0.58 -18.35 9.57 -193.25 -1.85 -20.20 16 10 C 0.46 15.37 7.43 133.04 0.99 16.36 16 11 N -0.72 -26.93 5.20 -345.09 -1.80 -28.72 16 12 C 0.15 6.56 5.63 86.38 0.49 7.04 16 13 C 0.01 0.66 5.09 29.85 0.15 0.81 16 14 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 15 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 18 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 H 0.12 2.54 6.62 -2.39 -0.02 2.53 16 23 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.17 2.86 7.31 -2.91 -0.02 2.84 16 26 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 27 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.40 14.50 4.57 -92.71 -0.42 14.07 16 29 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -76.62 296.52 -0.12 -76.74 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.70 Total: 16.86 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 5.03 Total: -34.20 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.36 Total: -104.01 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -4.23 Total: -64.25 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 63.56 SS G_CDS: -0.29 Total: 63.26 kcal Total: -76.62 -0.12 -76.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309928025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.240 kcal (2) G-P(sol) polarization free energy of solvation -76.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds