Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34879 * 116.99811 * 2 1 4 4 O 1.21614 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99801 * 180.02562 * 3 2 1 6 6 C 1.36754 * 126.18324 * 0.02613 * 5 3 2 7 7 N 1.30909 * 113.93629 * 179.71083 * 6 5 3 8 8 C 1.29396 * 117.46603 * 0.51881 * 7 6 5 9 9 C 1.50696 * 124.70635 * 179.76647 * 8 7 6 10 10 H 1.09004 * 109.47278 * 164.69728 * 9 8 7 11 11 C 1.52999 * 109.47017 * 284.69881 * 9 8 7 12 12 N 1.46905 * 109.47161 * 44.69805 * 9 8 7 13 13 C 1.46901 * 110.99870 * 155.00107 * 12 9 8 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00162 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99532 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47381 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47001 * 119.99934 * 18 16 14 21 21 H 1.48497 * 109.47392 * 239.99632 * 18 16 14 22 22 S 1.70923 * 110.58488 * 359.49971 * 8 7 6 23 23 H 1.09004 * 109.46803 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47333 * 299.99196 * 1 2 3 25 25 H 1.08993 * 109.47589 * 59.99852 * 1 2 3 26 26 H 1.08009 * 123.02931 * 0.02562 * 6 5 3 27 27 H 1.09006 * 109.47163 * 180.02562 * 11 9 8 28 28 H 1.08999 * 109.47123 * 299.99777 * 11 9 8 29 29 H 1.08997 * 109.47624 * 60.00343 * 11 9 8 30 30 H 1.00901 * 110.99869 * 31.04818 * 12 9 8 31 31 H 1.09004 * 109.47031 * 299.99620 * 13 12 9 32 32 H 1.08995 * 109.47111 * 59.99900 * 13 12 9 33 33 H 0.97001 * 119.99132 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2184 -0.0016 7 7 5.6543 0.5627 -0.0080 8 6 5.9282 1.8273 -0.0020 9 6 7.3206 2.4037 -0.0027 10 1 7.2765 3.4600 -0.2682 11 6 7.9356 2.2531 1.3901 12 7 8.1469 1.6865 -0.9830 13 6 9.2570 2.5271 -1.4512 14 6 10.0801 1.7597 -2.4535 15 1 9.8063 0.7486 -2.7161 16 6 11.1834 2.3482 -3.0345 17 7 11.5170 3.5794 -2.7143 18 14 12.2041 1.3968 -4.2763 19 1 11.6230 0.0427 -4.4611 20 1 12.2027 2.1179 -5.5745 21 1 13.5983 1.2731 -3.7803 22 16 4.4916 2.7534 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 4.0613 -0.8100 -0.0026 27 1 8.9426 2.6704 1.3898 28 1 7.3225 2.7852 2.1175 29 1 7.9798 1.1968 1.6556 30 1 7.5883 1.3609 -1.7576 31 1 8.8586 3.4264 -1.9211 32 1 9.8832 2.8068 -0.6041 33 1 12.2930 3.9934 -3.1233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314873062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = -39.075558 kcal Electronic energy + Delta-G solvation = -17583.212506 eV Core-core repulsion = 14543.163675 eV Total energy + Delta-G solvation = -3040.048831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62205 -39.67278 -36.66598 -36.19747 -32.93714 -31.13936 -29.77650 -27.73884 -26.40494 -25.78130 -22.94647 -22.31589 -21.27174 -19.57657 -18.33988 -17.54183 -16.69996 -16.66161 -16.34204 -15.04043 -14.87873 -14.76182 -14.49258 -13.97353 -13.67995 -13.54285 -12.91259 -12.52384 -12.42021 -11.90645 -11.67468 -11.64308 -11.61396 -11.11537 -11.09128 -11.00590 -10.68731 -10.62477 -10.04201 -9.61341 -9.57298 -9.25892 -8.98872 -8.52999 -7.44659 -6.07642 -4.09312 0.00046 0.90313 1.53403 2.12036 2.60061 2.87688 3.29853 3.37372 3.42980 4.01466 4.40368 4.57863 4.79483 4.82307 4.87689 5.03731 5.10393 5.22050 5.29098 5.50758 5.62162 5.88827 5.98805 6.09283 6.25203 6.60939 7.10450 7.29464 7.39830 7.59642 7.73727 8.04462 8.26055 8.48443 8.99696 9.55816 11.03536 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034479 B = 0.003588 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.887548 B = 7802.966365 C = 8117.307901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.350 6.350 3 C 0.553 3.447 4 O -0.509 6.509 5 C -0.323 4.323 6 C 0.137 3.863 7 N -0.461 5.461 8 C 0.078 3.922 9 C 0.153 3.847 10 H 0.060 0.940 11 C -0.131 4.131 12 N -0.665 5.665 13 C 0.192 3.808 14 C -0.513 4.513 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.283 1.283 22 S 0.225 5.775 23 H 0.104 0.896 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.190 0.810 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.335 0.665 31 H -0.011 1.011 32 H 0.034 0.966 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 -4.248 7.263 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.266 6.266 3 C 0.396 3.604 4 O -0.398 6.398 5 C -0.445 4.445 6 C -0.025 4.025 7 N -0.174 5.174 8 C -0.196 4.196 9 C 0.039 3.961 10 H 0.077 0.923 11 C -0.190 4.190 12 N -0.298 5.298 13 C 0.065 3.935 14 C -0.552 4.552 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 S 0.485 5.515 23 H 0.123 0.877 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.207 0.793 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.006 0.994 32 H 0.052 0.948 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.331 -3.342 7.690 20.158 hybrid contribution -0.406 -0.672 -1.297 1.516 sum -18.738 -4.014 6.393 20.201 Atomic orbital electron populations 1.23319 0.75521 1.03934 1.02768 1.86572 1.23741 1.31798 1.84504 1.19370 0.86621 0.81768 0.72592 1.90902 1.66527 1.35746 1.46669 1.24908 0.95515 0.98651 1.25449 1.22834 0.85886 1.00433 0.93311 1.66174 1.18942 1.16035 1.16226 1.28259 1.01587 0.92017 0.97763 1.20372 0.83000 0.95267 0.97420 0.92252 1.21780 1.01154 1.03110 0.92963 1.60845 1.11395 1.39850 1.17716 1.19715 0.87686 0.90763 0.95293 1.21180 1.10715 1.00435 1.22870 0.91734 1.24980 0.97459 0.94992 0.97093 1.69967 1.27092 1.12992 1.43649 0.86408 0.79995 0.80064 0.80760 1.19590 1.21101 1.20958 1.84131 0.96548 1.07016 1.63770 0.87716 0.91711 0.91681 0.79349 0.90768 0.93309 0.91219 0.84722 0.99373 0.94825 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.71 10.37 -40.98 -0.42 -4.13 16 3 C 0.55 7.16 7.92 34.06 0.27 7.43 16 4 O -0.51 -7.64 16.76 -19.35 -0.32 -7.96 16 5 C -0.32 -4.24 6.51 -36.79 -0.24 -4.48 16 6 C 0.14 1.76 11.20 -18.48 -0.21 1.56 16 7 N -0.46 -7.11 10.45 -11.26 -0.12 -7.23 16 8 C 0.08 1.18 5.89 -13.31 -0.08 1.10 16 9 C 0.15 2.60 3.11 -68.86 -0.21 2.39 16 10 H 0.06 0.99 7.80 -51.93 -0.40 0.58 16 11 C -0.13 -2.02 9.40 37.16 0.35 -1.68 16 12 N -0.67 -13.93 6.26 -109.22 -0.68 -14.61 16 13 C 0.19 4.83 5.24 -4.98 -0.03 4.80 16 14 C -0.51 -14.28 9.32 -34.44 -0.32 -14.60 16 15 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 S 0.22 2.97 23.00 -107.50 -2.47 0.50 16 23 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.19 1.88 8.06 -52.48 -0.42 1.46 16 27 H 0.07 1.22 7.45 -51.93 -0.39 0.83 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.34 7.00 8.34 -39.29 -0.33 6.67 16 31 H -0.01 -0.30 8.06 -51.93 -0.42 -0.72 16 32 H 0.03 0.90 7.44 -51.93 -0.39 0.51 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 309.55 15.07 4.66 4.66 Total: -1.00 -31.40 309.55 -7.14 -38.54 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.00 Total: -0.06 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 0.50 Total: -0.64 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.06 Total: -47.37 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.75 Total: -12.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.47 Total: 0.50 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.40 -7.14 -38.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314873062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.536 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds