Wall clock time and date at job start Mon Mar 30 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34879 * 116.99811 * 2 1 4 4 O 1.21614 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99801 * 180.02562 * 3 2 1 6 6 C 1.36754 * 126.18324 * 0.02613 * 5 3 2 7 7 N 1.30909 * 113.93629 * 179.71083 * 6 5 3 8 8 C 1.29396 * 117.46603 * 0.51881 * 7 6 5 9 9 C 1.50696 * 124.70635 * 179.76647 * 8 7 6 10 10 H 1.09004 * 109.47278 * 164.69728 * 9 8 7 11 11 C 1.52999 * 109.47017 * 284.69881 * 9 8 7 12 12 N 1.46905 * 109.47161 * 44.69805 * 9 8 7 13 13 C 1.46901 * 110.99870 * 155.00107 * 12 9 8 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 9 15 15 H 1.08000 * 120.00162 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99532 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47381 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47001 * 119.99934 * 18 16 14 21 21 H 1.48497 * 109.47392 * 239.99632 * 18 16 14 22 22 S 1.70923 * 110.58488 * 359.49971 * 8 7 6 23 23 H 1.09004 * 109.46803 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47333 * 299.99196 * 1 2 3 25 25 H 1.08993 * 109.47589 * 59.99852 * 1 2 3 26 26 H 1.08009 * 123.02931 * 0.02562 * 6 5 3 27 27 H 1.09006 * 109.47163 * 180.02562 * 11 9 8 28 28 H 1.08999 * 109.47123 * 299.99777 * 11 9 8 29 29 H 1.08997 * 109.47624 * 60.00343 * 11 9 8 30 30 H 1.00901 * 110.99869 * 31.04818 * 12 9 8 31 31 H 1.09004 * 109.47031 * 299.99620 * 13 12 9 32 32 H 1.08995 * 109.47111 * 59.99900 * 13 12 9 33 33 H 0.97001 * 119.99132 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2184 -0.0016 7 7 5.6543 0.5627 -0.0080 8 6 5.9282 1.8273 -0.0020 9 6 7.3206 2.4037 -0.0027 10 1 7.2765 3.4600 -0.2682 11 6 7.9356 2.2531 1.3901 12 7 8.1469 1.6865 -0.9830 13 6 9.2570 2.5271 -1.4512 14 6 10.0801 1.7597 -2.4535 15 1 9.8063 0.7486 -2.7161 16 6 11.1834 2.3482 -3.0345 17 7 11.5170 3.5794 -2.7143 18 14 12.2041 1.3968 -4.2763 19 1 11.6230 0.0427 -4.4611 20 1 12.2027 2.1179 -5.5745 21 1 13.5983 1.2731 -3.7803 22 16 4.4916 2.7534 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 4.0613 -0.8100 -0.0026 27 1 8.9426 2.6704 1.3898 28 1 7.3225 2.7852 2.1175 29 1 7.9798 1.1968 1.6556 30 1 7.5883 1.3609 -1.7576 31 1 8.8586 3.4264 -1.9211 32 1 9.8832 2.8068 -0.6041 33 1 12.2930 3.9934 -3.1233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314873062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:20 Heat of formation + Delta-G solvation = -60.895917 kcal Electronic energy + Delta-G solvation = -17584.158708 eV Core-core repulsion = 14543.163675 eV Total energy + Delta-G solvation = -3040.995032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.59725 -40.76554 -37.77728 -37.56360 -34.92387 -32.54180 -31.14179 -28.49962 -28.13321 -27.08234 -24.31759 -23.73443 -22.65069 -20.71522 -19.50478 -18.83759 -18.10956 -17.65751 -17.54432 -16.76822 -16.30253 -16.05181 -15.83877 -15.12222 -14.80084 -14.64706 -14.31454 -14.19238 -13.61234 -13.23638 -13.16957 -13.08220 -12.78261 -12.63265 -12.50447 -12.24635 -12.13758 -11.95805 -11.88685 -11.31415 -10.72699 -10.70242 -10.64636 -10.09828 -9.18875 -8.21911 -6.31668 -1.07985 -0.15223 0.44928 1.07211 1.42317 1.43483 1.56987 1.73589 1.83376 2.41419 2.87883 3.12273 3.43763 3.65477 3.74802 4.07195 4.21461 4.28392 4.28758 4.33359 4.71024 4.76191 4.90184 4.94124 5.10746 5.12007 5.25315 5.32318 5.62735 6.01468 6.36468 6.44403 6.53584 6.65128 6.86795 7.38685 8.89658 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034479 B = 0.003588 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.887548 B = 7802.966365 C = 8117.307901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.347 6.347 3 C 0.557 3.443 4 O -0.534 6.534 5 C -0.326 4.326 6 C 0.141 3.859 7 N -0.481 5.481 8 C 0.059 3.941 9 C 0.151 3.849 10 H 0.062 0.938 11 C -0.125 4.125 12 N -0.667 5.667 13 C 0.208 3.792 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.278 1.278 22 S 0.258 5.742 23 H 0.139 0.861 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.334 0.666 31 H -0.033 1.033 32 H 0.013 0.987 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.085 -5.455 7.184 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.401 3.599 4 O -0.426 6.426 5 C -0.449 4.449 6 C -0.020 4.020 7 N -0.195 5.195 8 C -0.214 4.214 9 C 0.037 3.963 10 H 0.080 0.920 11 C -0.184 4.184 12 N -0.299 5.299 13 C 0.081 3.919 14 C -0.572 4.572 15 H 0.079 0.921 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.204 1.204 22 S 0.518 5.482 23 H 0.157 0.843 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.233 0.767 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.152 0.848 31 H -0.015 1.015 32 H 0.031 0.969 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.566 -4.568 7.625 21.491 hybrid contribution -0.190 -0.314 -1.225 1.278 sum -19.755 -4.883 6.401 21.333 Atomic orbital electron populations 1.23686 0.73450 1.06274 1.02915 1.86568 1.25699 1.30298 1.83765 1.19334 0.86416 0.82128 0.72016 1.90894 1.66976 1.36695 1.48022 1.25098 0.95999 0.98705 1.25071 1.23169 0.84813 1.01571 0.92471 1.66178 1.20439 1.16326 1.16559 1.27797 1.01410 0.92622 0.99533 1.20350 0.83981 0.95112 0.96829 0.92013 1.21729 1.00824 1.02953 0.92924 1.60685 1.11630 1.39679 1.17924 1.19336 0.88562 0.90213 0.93822 1.21527 1.11495 1.00551 1.23676 0.92053 1.25868 0.98621 0.95904 0.98987 1.70076 1.27739 1.14479 1.44815 0.85327 0.78205 0.78799 0.78228 1.18927 1.20358 1.20373 1.84008 0.95037 1.06405 1.62702 0.84310 0.91479 0.91691 0.76657 0.92332 0.90212 0.91919 0.84807 1.01520 0.96867 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.35 -6.54 10.37 -57.93 -0.60 -7.14 16 3 C 0.56 13.43 7.92 69.97 0.55 13.99 16 4 O -0.53 -15.31 16.76 19.46 0.33 -14.98 16 5 C -0.33 -8.00 6.51 24.08 0.16 -7.84 16 6 C 0.14 3.35 11.20 84.48 0.95 4.30 16 7 N -0.48 -14.30 10.45 -189.53 -1.98 -16.28 16 8 C 0.06 1.76 5.89 88.47 0.52 2.28 16 9 C 0.15 5.12 3.11 44.17 0.14 5.26 16 10 H 0.06 2.08 7.80 -2.38 -0.02 2.06 16 11 C -0.12 -3.85 9.40 71.98 0.68 -3.17 16 12 N -0.67 -28.40 6.26 -499.46 -3.12 -31.53 16 13 C 0.21 10.79 5.24 85.56 0.45 11.24 16 14 C -0.53 -30.14 9.32 25.60 0.24 -29.90 16 15 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 16 C 0.00 0.26 5.46 84.66 0.46 0.73 16 17 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 18 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 S 0.26 6.50 23.00 -56.49 -1.30 5.20 16 23 H 0.14 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.22 3.73 8.06 -2.91 -0.02 3.71 16 27 H 0.06 1.96 7.45 -2.38 -0.02 1.95 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.33 14.16 8.34 -89.69 -0.75 13.41 16 31 H -0.03 -1.81 8.06 -2.39 -0.02 -1.82 16 32 H 0.01 0.73 7.44 -2.39 -0.02 0.72 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -67.09 309.55 1.36 -65.73 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.39 Total: 9.33 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.34 Total: -1.57 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.82 Total: -102.65 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.27 Total: -22.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.30 Total: 5.20 kcal Total: -67.09 1.36 -65.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314873062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.835 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds