Wall clock time and date at job start Mon Mar 30 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.77224 * 127.34033 * 2 1 4 4 C 1.72208 * 94.84679 * 179.81040 * 3 2 1 5 5 O 1.21828 * 127.05444 * 180.20120 * 4 3 2 6 6 N 1.34246 * 105.88561 * 0.31727 * 4 3 2 7 7 C 1.46488 * 121.37907 * 179.88148 * 6 4 3 8 8 C 1.50703 * 109.47308 * 269.71826 * 7 6 4 9 9 O 1.21291 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99967 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00046 * 359.97438 * 10 8 7 12 12 C 1.37098 * 119.99659 * 180.02562 * 10 8 7 13 13 H 1.07996 * 120.00088 * 24.39409 * 12 10 8 14 14 C 1.38945 * 119.99722 * 204.39312 * 12 10 8 15 15 N 1.31412 * 120.00450 * 12.64572 * 14 12 10 16 16 Si 1.86800 * 119.99952 * 192.64635 * 14 12 10 17 17 H 1.48498 * 109.47206 * 89.99908 * 16 14 12 18 18 H 1.48493 * 109.47271 * 209.99940 * 16 14 12 19 19 H 1.48495 * 109.47213 * 330.00045 * 16 14 12 20 20 C 1.32566 * 127.34034 * 179.97438 * 2 1 3 21 21 C 1.50704 * 121.64258 * 0.02562 * 20 2 1 22 22 H 1.09004 * 109.47457 * 270.00288 * 1 2 3 23 23 H 1.08998 * 109.47552 * 30.00578 * 1 2 3 24 24 H 1.09009 * 109.47233 * 150.00433 * 1 2 3 25 25 H 1.09003 * 109.47210 * 149.72045 * 7 6 4 26 26 H 1.09005 * 109.47548 * 29.72027 * 7 6 4 27 27 H 1.09007 * 109.47109 * 85.86658 * 11 10 8 28 28 H 1.08998 * 109.47009 * 205.86374 * 11 10 8 29 29 H 1.08994 * 109.47448 * 325.87036 * 11 10 8 30 30 H 0.96998 * 120.00018 * 180.02562 * 15 14 12 31 31 H 1.08994 * 109.47290 * 269.97514 * 21 20 2 32 32 H 1.08997 * 109.47342 * 29.98214 * 21 20 2 33 33 H 1.09000 * 109.46668 * 149.97831 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0344 0.4839 0.0057 5 8 5.1759 0.9096 0.0112 6 7 3.6507 -0.8025 0.0001 7 6 4.6312 -1.8909 0.0001 8 6 4.9674 -2.2643 -1.4207 9 8 4.4402 -1.6784 -2.3427 10 7 5.8539 -3.2492 -1.6669 11 6 6.4911 -3.9564 -0.5534 12 6 6.1602 -3.5884 -2.9595 13 1 6.0308 -2.8666 -3.7523 14 6 6.6369 -4.8609 -3.2494 15 7 6.5625 -5.8122 -2.3459 16 14 7.3838 -5.2194 -4.9237 17 1 8.8439 -4.9521 -4.8819 18 1 7.1512 -6.6433 -5.2748 19 1 6.7501 -4.3478 -5.9453 20 6 2.3111 -1.0540 0.0005 21 6 1.7706 -2.4607 0.0005 22 1 -0.3634 0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3634 -0.8901 -0.5138 25 1 4.2131 -2.7566 0.5140 26 1 5.5357 -1.5653 0.5139 27 1 5.8497 -4.7758 -0.2288 28 1 7.4524 -4.3544 -0.8783 29 1 6.6452 -3.2654 0.2753 30 1 6.8957 -6.7004 -2.5482 31 1 1.6403 -2.7999 1.0281 32 1 0.8095 -2.4808 -0.5133 33 1 2.4711 -3.1191 -0.5133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330385696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:28 Heat of formation + Delta-G solvation = -29.092208 kcal Electronic energy + Delta-G solvation = -18943.328352 eV Core-core repulsion = 15903.712432 eV Total energy + Delta-G solvation = -3039.615920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79887 -38.23256 -37.33833 -34.79674 -33.28424 -31.79330 -29.86061 -29.07158 -26.41448 -25.16185 -24.28300 -22.95580 -19.87757 -18.98920 -17.99872 -17.10663 -16.72160 -16.22722 -15.37661 -15.01404 -14.63118 -14.33718 -13.93247 -13.79972 -13.69064 -13.41131 -12.90015 -12.57171 -12.45951 -12.30719 -11.97891 -11.64239 -11.37639 -11.35224 -11.03900 -10.95014 -10.74954 -10.41063 -10.37366 -9.77619 -9.38083 -9.11010 -8.47571 -7.79415 -7.58738 -6.43198 -3.99663 1.21915 1.62585 1.98786 2.48658 3.07064 3.11015 3.20752 3.26676 3.68991 4.06019 4.64610 4.78928 4.96894 5.10090 5.20435 5.36026 5.42201 5.49423 5.50094 5.58431 5.61986 5.85477 5.94425 5.98135 6.18558 6.43229 6.70128 7.04442 7.05747 7.47579 7.62694 8.01201 8.36102 9.06133 9.27260 9.81069 10.61472 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.005278 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.905841 B = 5303.571341 C = 5508.756853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.224 4.224 3 S -0.017 6.017 4 C 0.493 3.507 5 O -0.477 6.477 6 N -0.507 5.507 7 C 0.088 3.912 8 C 0.429 3.571 9 O -0.575 6.575 10 N -0.438 5.438 11 C 0.106 3.894 12 C -0.306 4.306 13 H 0.098 0.902 14 C 0.033 3.967 15 N -0.880 5.880 16 Si 0.928 3.072 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.122 3.878 21 C -0.102 4.102 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.026 0.974 30 H 0.269 0.731 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 3.964 8.708 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.344 4.344 3 S 0.225 5.775 4 C 0.175 3.825 5 O -0.356 6.356 6 N -0.225 5.225 7 C -0.041 4.041 8 C 0.216 3.784 9 O -0.459 6.459 10 N -0.157 5.157 11 C -0.038 4.038 12 C -0.434 4.434 13 H 0.116 0.884 14 C -0.171 4.171 15 N -0.519 5.519 16 Si 0.755 3.245 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.011 3.989 21 C -0.161 4.161 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.318 5.625 8.260 13.664 hybrid contribution 0.926 -1.822 -0.756 2.179 sum -8.393 3.803 7.504 11.883 Atomic orbital electron populations 1.20030 0.86060 1.03053 1.02266 1.23269 0.99306 0.91877 1.19899 1.84719 0.98700 1.12062 1.81974 1.21338 0.94250 0.84709 0.82228 1.90924 1.19321 1.71797 1.53605 1.45525 1.05891 1.07320 1.63779 1.21767 0.93131 0.89873 0.99289 1.20070 0.83122 0.85819 0.89434 1.90566 1.54567 1.55561 1.45243 1.43536 1.34638 1.30612 1.06943 1.21571 1.00286 0.94694 0.87228 1.19662 1.41814 0.97473 0.84424 0.88396 1.25355 0.97538 0.94662 0.99505 1.69973 1.44641 1.02380 1.34951 0.85890 0.79301 0.77623 0.81734 1.20230 1.20829 1.19303 1.19215 0.82083 0.98065 0.99573 1.20779 1.02440 0.89633 1.03253 0.91114 0.91189 0.90517 0.87392 0.87481 0.92613 0.90255 0.95592 0.92084 0.89890 0.89303 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.10 36.00 0.36 -0.15 16 2 C -0.22 -3.09 6.72 -36.22 -0.24 -3.34 16 3 S -0.02 -0.28 22.97 -107.50 -2.47 -2.75 16 4 C 0.49 9.83 8.27 53.82 0.45 10.27 16 5 O -0.48 -10.85 17.55 5.07 0.09 -10.76 16 6 N -0.51 -9.36 2.09 -118.57 -0.25 -9.61 16 7 C 0.09 1.65 4.08 -5.20 -0.02 1.63 16 8 C 0.43 10.42 7.43 -10.98 -0.08 10.34 16 9 O -0.58 -16.21 16.14 5.55 0.09 -16.12 16 10 N -0.44 -11.04 3.01 -122.20 -0.37 -11.40 16 11 C 0.11 2.26 8.44 59.84 0.51 2.76 16 12 C -0.31 -8.46 9.24 -14.93 -0.14 -8.60 16 13 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 14 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 15 N -0.88 -22.69 10.84 55.50 0.60 -22.09 16 16 Si 0.93 20.54 29.57 -169.99 -5.03 15.51 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.12 1.87 6.59 -82.51 -0.54 1.33 16 21 C -0.10 -1.25 9.07 36.01 0.33 -0.93 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.63 6.77 -51.92 -0.35 0.28 16 25 H 0.11 1.65 6.80 -51.93 -0.35 1.30 16 26 H 0.11 1.92 7.06 -51.93 -0.37 1.56 16 27 H 0.06 1.17 7.83 -51.93 -0.41 0.77 16 28 H 0.08 1.81 6.80 -51.93 -0.35 1.46 16 29 H 0.03 0.45 6.61 -51.93 -0.34 0.11 16 30 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.91 6.69 -51.93 -0.35 0.56 16 33 H 0.08 1.22 6.70 -51.93 -0.35 0.87 16 LS Contribution 293.91 15.07 4.43 4.43 Total: -1.00 -33.37 293.91 -6.04 -39.41 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.66 Total: -0.70 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 0.53 Total: 14.09 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.01 Total: -43.10 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: 0.18 Total: -26.89 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.47 Total: -2.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.37 -6.04 -39.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330385696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.314 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds