Wall clock time and date at job start Mon Mar 30 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.77224 * 127.34033 * 2 1 4 4 C 1.72208 * 94.84679 * 179.81040 * 3 2 1 5 5 O 1.21828 * 127.05444 * 180.20120 * 4 3 2 6 6 N 1.34246 * 105.88561 * 0.31727 * 4 3 2 7 7 C 1.46488 * 121.37907 * 179.88148 * 6 4 3 8 8 C 1.50703 * 109.47308 * 269.71826 * 7 6 4 9 9 O 1.21291 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99967 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00046 * 359.97438 * 10 8 7 12 12 C 1.37098 * 119.99659 * 180.02562 * 10 8 7 13 13 H 1.07996 * 120.00088 * 24.39409 * 12 10 8 14 14 C 1.38945 * 119.99722 * 204.39312 * 12 10 8 15 15 N 1.31412 * 120.00450 * 12.64572 * 14 12 10 16 16 Si 1.86800 * 119.99952 * 192.64635 * 14 12 10 17 17 H 1.48498 * 109.47206 * 89.99908 * 16 14 12 18 18 H 1.48493 * 109.47271 * 209.99940 * 16 14 12 19 19 H 1.48495 * 109.47213 * 330.00045 * 16 14 12 20 20 C 1.32566 * 127.34034 * 179.97438 * 2 1 3 21 21 C 1.50704 * 121.64258 * 0.02562 * 20 2 1 22 22 H 1.09004 * 109.47457 * 270.00288 * 1 2 3 23 23 H 1.08998 * 109.47552 * 30.00578 * 1 2 3 24 24 H 1.09009 * 109.47233 * 150.00433 * 1 2 3 25 25 H 1.09003 * 109.47210 * 149.72045 * 7 6 4 26 26 H 1.09005 * 109.47548 * 29.72027 * 7 6 4 27 27 H 1.09007 * 109.47109 * 85.86658 * 11 10 8 28 28 H 1.08998 * 109.47009 * 205.86374 * 11 10 8 29 29 H 1.08994 * 109.47448 * 325.87036 * 11 10 8 30 30 H 0.96998 * 120.00018 * 180.02562 * 15 14 12 31 31 H 1.08994 * 109.47290 * 269.97514 * 21 20 2 32 32 H 1.08997 * 109.47342 * 29.98214 * 21 20 2 33 33 H 1.09000 * 109.46668 * 149.97831 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0344 0.4839 0.0057 5 8 5.1759 0.9096 0.0112 6 7 3.6507 -0.8025 0.0001 7 6 4.6312 -1.8909 0.0001 8 6 4.9674 -2.2643 -1.4207 9 8 4.4402 -1.6784 -2.3427 10 7 5.8539 -3.2492 -1.6669 11 6 6.4911 -3.9564 -0.5534 12 6 6.1602 -3.5884 -2.9595 13 1 6.0308 -2.8666 -3.7523 14 6 6.6369 -4.8609 -3.2494 15 7 6.5625 -5.8122 -2.3459 16 14 7.3838 -5.2194 -4.9237 17 1 8.8439 -4.9521 -4.8819 18 1 7.1512 -6.6433 -5.2748 19 1 6.7501 -4.3478 -5.9453 20 6 2.3111 -1.0540 0.0005 21 6 1.7706 -2.4607 0.0005 22 1 -0.3634 0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3634 -0.8901 -0.5138 25 1 4.2131 -2.7566 0.5140 26 1 5.5357 -1.5653 0.5139 27 1 5.8497 -4.7758 -0.2288 28 1 7.4524 -4.3544 -0.8783 29 1 6.6452 -3.2654 0.2753 30 1 6.8957 -6.7004 -2.5482 31 1 1.6403 -2.7999 1.0281 32 1 0.8095 -2.4808 -0.5133 33 1 2.4711 -3.1191 -0.5133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330385696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:28 Heat of formation + Delta-G solvation = -51.525641 kcal Electronic energy + Delta-G solvation = -18944.301138 eV Core-core repulsion = 15903.712432 eV Total energy + Delta-G solvation = -3040.588707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20391 -40.07765 -38.75617 -36.75244 -34.53803 -33.74355 -31.17352 -30.18639 -28.22312 -26.70855 -25.72811 -24.44821 -21.36584 -20.57179 -19.24198 -19.03315 -18.43507 -17.74284 -17.09857 -16.55587 -16.30865 -16.05110 -15.69712 -14.91550 -14.85134 -14.48767 -14.37327 -14.01038 -13.61835 -13.49308 -13.42998 -13.22804 -13.18581 -12.82179 -12.69603 -12.40830 -12.33301 -12.16997 -11.85824 -11.25485 -11.06146 -10.84159 -10.21209 -9.76437 -8.85399 -8.41559 -6.07264 -0.14373 0.37643 0.77082 1.11023 1.32664 1.38925 1.50012 1.76341 1.85463 2.23847 2.94271 2.99994 3.56083 3.81668 3.87892 4.05408 4.13709 4.28807 4.55788 4.58767 4.67343 4.79016 4.91514 4.95765 5.07256 5.10305 5.29230 5.38010 5.42543 5.75178 5.99286 6.22108 6.39189 7.07051 7.32668 7.87699 8.60933 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.005278 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.905841 B = 5303.571341 C = 5508.756853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.203 4.203 3 S 0.007 5.993 4 C 0.462 3.538 5 O -0.528 6.528 6 N -0.511 5.511 7 C 0.100 3.900 8 C 0.421 3.579 9 O -0.625 6.625 10 N -0.452 5.452 11 C 0.112 3.888 12 C -0.347 4.347 13 H 0.064 0.936 14 C 0.007 3.993 15 N -0.887 5.887 16 Si 0.987 3.013 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.280 1.280 20 C 0.087 3.913 21 C -0.096 4.096 22 H 0.098 0.902 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.277 0.723 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 2.995 9.788 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.322 4.322 3 S 0.250 5.750 4 C 0.146 3.854 5 O -0.412 6.412 6 N -0.230 5.230 7 C -0.028 4.028 8 C 0.209 3.791 9 O -0.513 6.513 10 N -0.170 5.170 11 C -0.030 4.030 12 C -0.475 4.475 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.525 5.525 16 Si 0.811 3.189 17 H -0.192 1.192 18 H -0.192 1.192 19 H -0.205 1.205 20 C -0.022 4.022 21 C -0.155 4.155 22 H 0.117 0.883 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.164 0.836 26 H 0.131 0.869 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.142 4.618 9.382 15.281 hybrid contribution 1.358 -1.498 -1.085 2.295 sum -9.785 3.120 8.297 13.203 Atomic orbital electron populations 1.20302 0.82406 1.04396 1.04483 1.24043 1.01080 0.89984 1.17084 1.84586 0.97109 1.12325 1.80940 1.21966 0.94966 0.85773 0.82678 1.90874 1.21301 1.73096 1.55942 1.45650 1.07124 1.06726 1.63477 1.21659 0.94238 0.91499 0.95432 1.20961 0.82046 0.84679 0.91369 1.90514 1.56236 1.56992 1.47520 1.43782 1.35099 1.31083 1.07073 1.21586 0.98964 0.95443 0.87034 1.19514 1.44800 0.97912 0.85265 0.91808 1.26011 0.96936 0.93880 1.02807 1.70010 1.43812 1.02612 1.36025 0.85029 0.78725 0.77737 0.77425 1.19163 1.19184 1.20518 1.19825 0.80919 1.00162 1.01281 1.20882 1.02323 0.86949 1.05304 0.88308 0.90279 0.88603 0.83633 0.86858 0.92277 0.92077 0.91769 0.91322 0.86512 0.87043 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.10 71.24 0.72 -0.11 16 2 C -0.20 -5.07 6.72 24.53 0.16 -4.91 16 3 S 0.01 0.21 22.97 -56.49 -1.30 -1.09 16 4 C 0.46 18.73 8.27 129.87 1.07 19.81 16 5 O -0.53 -25.04 17.55 -4.76 -0.08 -25.13 16 6 N -0.51 -18.72 2.09 -647.51 -1.35 -20.07 16 7 C 0.10 3.72 4.08 85.64 0.35 4.06 16 8 C 0.42 20.96 7.43 87.66 0.65 21.61 16 9 O -0.63 -36.72 16.14 -3.06 -0.05 -36.77 16 10 N -0.45 -23.24 3.01 -658.90 -1.98 -25.22 16 11 C 0.11 4.74 8.44 127.77 1.08 5.82 16 12 C -0.35 -19.84 9.24 84.04 0.78 -19.06 16 13 H 0.06 4.00 7.45 -2.91 -0.02 3.97 16 14 C 0.01 0.35 5.04 84.93 0.43 0.78 16 15 N -0.89 -45.19 10.84 21.66 0.23 -44.96 16 16 Si 0.99 42.18 29.57 68.60 2.03 44.21 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.09 2.52 6.59 40.71 0.27 2.79 16 21 C -0.10 -2.09 9.07 71.24 0.65 -1.44 16 22 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.10 1.11 6.77 -2.38 -0.02 1.09 16 25 H 0.15 4.19 6.80 -2.39 -0.02 4.17 16 26 H 0.11 4.04 7.06 -2.38 -0.02 4.02 16 27 H 0.06 2.42 7.83 -2.38 -0.02 2.41 16 28 H 0.06 2.78 6.80 -2.39 -0.02 2.76 16 29 H 0.06 2.17 6.61 -2.39 -0.02 2.16 16 30 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.11 1.88 6.69 -2.39 -0.02 1.86 16 33 H 0.05 1.47 6.70 -2.39 -0.02 1.46 16 Total: -1.00 -76.42 293.91 4.79 -71.63 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.14 Total: 8.04 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 6.16 Total: 29.36 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -3.10 Total: -90.25 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -0.13 Total: -61.90 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.30 Total: -1.09 kcal Total: -76.42 4.79 -71.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330385696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.100 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds