Wall clock time and date at job start Mon Mar 30 2020 01:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32561 * 121.64803 * 2 1 4 4 S 1.77237 * 105.31903 * 180.19893 * 3 2 1 5 5 C 1.72205 * 94.84592 * 359.76621 * 4 3 2 6 6 O 1.21828 * 127.06112 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88957 * 359.97438 * 5 4 3 8 8 C 1.46495 * 121.38520 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47077 * 90.02559 * 8 7 5 10 10 C 1.50695 * 109.47271 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99959 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99921 * 359.97438 * 12 10 9 14 14 C 1.37095 * 120.00092 * 179.97438 * 12 10 9 15 15 H 1.08005 * 120.00221 * 24.39825 * 14 12 10 16 16 C 1.38949 * 120.00136 * 204.38844 * 14 12 10 17 17 N 1.31411 * 120.00003 * 12.64925 * 16 14 12 18 18 Si 1.86799 * 120.00359 * 192.63816 * 16 14 12 19 19 H 1.48501 * 109.46824 * 90.00332 * 18 16 14 20 20 H 1.48498 * 109.47292 * 210.00751 * 18 16 14 21 21 H 1.48506 * 109.47051 * 330.00896 * 18 16 14 22 22 H 1.09005 * 109.46599 * 270.23553 * 1 2 3 23 23 H 1.09000 * 109.47305 * 30.23164 * 1 2 3 24 24 H 1.08994 * 109.47658 * 150.23851 * 1 2 3 25 25 H 1.07997 * 127.34394 * 359.94974 * 3 2 1 26 26 H 1.09001 * 109.47235 * 330.02754 * 8 7 5 27 27 H 1.09005 * 109.47512 * 210.02307 * 8 7 5 28 28 H 1.09001 * 109.46929 * 60.00008 * 9 8 7 29 29 H 1.09002 * 109.47050 * 300.00645 * 9 8 7 30 30 H 1.09003 * 109.46980 * 85.87043 * 13 12 10 31 31 H 1.08998 * 109.47058 * 205.86141 * 13 12 10 32 32 H 1.08994 * 109.47363 * 325.86596 * 13 12 10 33 33 H 0.97006 * 120.00122 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0010 6 8 4.3672 -1.9705 -0.0020 7 7 2.2222 -1.1605 0.0053 8 6 1.5576 -2.4661 0.0104 9 6 1.3323 -2.9180 1.4546 10 6 0.6492 -4.2613 1.4599 11 8 0.3696 -4.8036 0.4117 12 7 0.3480 -4.8595 2.6295 13 6 0.6852 -4.2042 3.8956 14 6 -0.2738 -6.0813 2.6343 15 1 -0.1778 -6.7396 1.7834 16 6 -1.0276 -6.4729 3.7339 17 7 -1.3528 -5.5933 4.6545 18 14 -1.5789 -8.2496 3.9036 19 1 -0.5494 -9.0183 4.6484 20 1 -2.8657 -8.3002 4.6431 21 1 -1.7596 -8.8429 2.5543 22 1 -0.3633 0.0042 1.0277 23 1 -0.3634 0.8879 -0.5174 24 1 -0.3634 -0.8920 -0.5101 25 1 1.8154 2.1367 -0.0008 26 1 2.1838 -3.1945 -0.5048 27 1 0.5974 -2.3871 -0.4996 28 1 0.7061 -2.1895 1.9698 29 1 2.2924 -2.9970 1.9646 30 1 -0.1157 -3.5197 4.1750 31 1 0.8068 -4.9578 4.6737 32 1 1.6152 -3.6476 3.7803 33 1 -1.8793 -5.8666 5.4220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330408542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:03 Heat of formation + Delta-G solvation = -31.336556 kcal Electronic energy + Delta-G solvation = -18555.445082 eV Core-core repulsion = 15515.731840 eV Total energy + Delta-G solvation = -3039.713242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97921 -38.50256 -37.51509 -34.85156 -33.08909 -31.73705 -30.99860 -28.17270 -26.34681 -25.17550 -24.03112 -22.79082 -20.28942 -18.91798 -18.06505 -17.20272 -16.85689 -16.10723 -15.83010 -15.02674 -14.88926 -14.54555 -14.11981 -14.10322 -13.72258 -13.64396 -13.08461 -12.73224 -12.48360 -12.03656 -11.65948 -11.48406 -11.37773 -11.26772 -11.18056 -10.90455 -10.85389 -10.38902 -10.31062 -10.00352 -9.57379 -9.06585 -8.51738 -7.96141 -7.73874 -6.38620 -3.95208 0.96499 1.34995 1.77726 2.20041 2.80471 3.13094 3.22391 3.27801 3.79515 4.08840 4.44575 4.82124 4.88949 5.04271 5.10980 5.22798 5.32075 5.35873 5.47802 5.61529 5.64117 5.90346 5.95691 6.12431 6.25584 6.33421 6.77624 6.81281 7.12136 7.36376 7.51306 8.06818 8.40841 9.11031 9.34651 9.89039 10.66310 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.004288 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.519950 B = 6527.971851 C = 6678.712811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.113 3.887 3 C -0.249 4.249 4 S -0.017 6.017 5 C 0.482 3.518 6 O -0.470 6.470 7 N -0.531 5.531 8 C 0.119 3.881 9 C -0.143 4.143 10 C 0.450 3.550 11 O -0.592 6.592 12 N -0.442 5.442 13 C 0.110 3.890 14 C -0.308 4.308 15 H 0.099 0.901 16 C 0.032 3.968 17 N -0.882 5.882 18 Si 0.927 3.073 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.189 0.811 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 14.418 -4.566 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.001 3.999 3 C -0.387 4.387 4 S 0.225 5.775 5 C 0.164 3.836 6 O -0.350 6.350 7 N -0.251 5.251 8 C -0.006 4.006 9 C -0.184 4.184 10 C 0.237 3.763 11 O -0.478 6.478 12 N -0.160 5.160 13 C -0.034 4.034 14 C -0.436 4.436 15 H 0.117 0.883 16 C -0.172 4.172 17 N -0.521 5.521 18 Si 0.754 3.246 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.193 1.193 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.207 0.793 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.773 14.185 -4.873 15.740 hybrid contribution -1.508 -1.404 0.509 2.123 sum 3.265 12.781 -4.364 13.895 Atomic orbital electron populations 1.20855 0.86579 1.04607 1.04429 1.19538 0.96020 0.84954 0.99345 1.24790 0.92863 1.01150 1.19922 1.84993 1.09052 1.02035 1.81454 1.21552 0.83957 0.95390 0.82741 1.90975 1.48692 1.42294 1.53005 1.46257 1.06353 1.08366 1.64125 1.21713 0.99423 0.81097 0.98329 1.21817 1.02124 0.97999 0.96498 1.19710 0.85320 0.86548 0.84703 1.90524 1.59372 1.66658 1.31206 1.43557 1.50585 1.17918 1.03924 1.21502 0.96418 0.97851 0.87580 1.19672 1.27319 0.92180 1.04399 0.88335 1.25358 0.95682 0.99785 0.96352 1.69989 1.36790 1.33461 1.11823 0.85909 0.77910 0.82102 0.78709 1.20308 1.20896 1.19294 0.89293 0.89292 0.89922 0.79344 0.88065 0.88015 0.89840 0.89992 0.92893 0.90592 0.95635 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.69 36.01 0.35 -0.55 16 2 C 0.11 1.25 6.59 -82.50 -0.54 0.70 16 3 C -0.25 -2.40 11.25 28.82 0.32 -2.07 16 4 S -0.02 -0.21 22.97 -107.50 -2.47 -2.68 16 5 C 0.48 7.66 8.27 53.82 0.45 8.10 16 6 O -0.47 -9.08 17.55 5.07 0.09 -8.99 16 7 N -0.53 -7.57 2.60 -117.28 -0.31 -7.88 16 8 C 0.12 1.92 4.56 -4.04 -0.02 1.90 16 9 C -0.14 -2.58 4.63 -27.88 -0.13 -2.71 16 10 C 0.45 10.67 7.63 -10.99 -0.08 10.59 16 11 O -0.59 -15.81 15.69 5.55 0.09 -15.72 16 12 N -0.44 -11.21 3.01 -122.20 -0.37 -11.58 16 13 C 0.11 2.44 8.44 59.85 0.51 2.95 16 14 C -0.31 -8.51 9.24 -14.93 -0.14 -8.65 16 15 H 0.10 2.85 7.45 -52.48 -0.39 2.46 16 16 C 0.03 0.83 5.04 -17.47 -0.09 0.74 16 17 N -0.88 -23.16 10.83 55.50 0.60 -22.56 16 18 Si 0.93 20.55 29.57 -169.99 -5.03 15.52 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 24 H 0.08 0.78 6.18 -51.93 -0.32 0.46 16 25 H 0.19 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.10 1.84 7.76 -51.93 -0.40 1.44 16 27 H 0.10 1.53 6.07 -51.93 -0.32 1.22 16 28 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 29 H 0.08 1.49 7.41 -51.93 -0.38 1.10 16 30 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 31 H 0.08 1.79 6.80 -51.93 -0.35 1.43 16 32 H 0.03 0.48 6.61 -51.93 -0.34 0.13 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 295.73 15.07 4.46 4.46 Total: -1.00 -31.94 295.73 -6.05 -37.99 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.74 Total: 0.43 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 0.62 Total: 11.01 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.07 Total: -42.01 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.18 Total: -24.71 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.47 Total: -2.68 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.94 -6.05 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330408542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.655 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds