Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54449 * 2 1 4 4 O 1.42101 * 110.54268 * 223.25685 * 2 1 3 5 5 N 1.65598 * 104.45060 * 111.62632 * 2 1 3 6 6 C 1.46497 * 120.00244 * 270.00103 * 5 2 1 7 7 C 1.50703 * 109.47124 * 265.00133 * 6 5 2 8 8 H 1.08004 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99921 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00065 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99865 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47484 * 59.99366 * 11 9 7 13 13 H 1.48497 * 109.47110 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46795 * 299.99221 * 11 9 7 15 15 C 1.46504 * 119.99436 * 90.00116 * 5 2 1 16 16 C 1.50707 * 109.46935 * 95.00474 * 15 5 2 17 17 C 1.38227 * 119.62059 * 95.01845 * 16 15 5 18 18 C 1.38627 * 119.15702 * 179.74122 * 17 16 15 19 19 C 1.38669 * 118.42389 * 0.47826 * 18 17 16 20 20 C 1.38186 * 119.16143 * 359.49762 * 19 18 17 21 21 N 1.31856 * 119.61137 * 274.99275 * 16 15 5 22 22 H 1.08998 * 109.46762 * 299.99616 * 1 2 3 23 23 H 1.09001 * 109.46907 * 59.99578 * 1 2 3 24 24 H 1.08994 * 109.47035 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47232 * 24.99515 * 6 5 2 26 26 H 1.08992 * 109.47302 * 145.00348 * 6 5 2 27 27 H 0.97010 * 119.99840 * 180.02562 * 10 9 7 28 28 H 1.08997 * 109.47679 * 334.99942 * 15 5 2 29 29 H 1.09003 * 109.46652 * 214.99902 * 15 5 2 30 30 H 1.07998 * 120.41916 * 359.95342 * 17 16 15 31 31 H 1.08008 * 120.78688 * 180.22921 * 18 17 16 32 32 H 1.08002 * 120.42244 * 179.78279 * 19 18 17 33 33 H 1.07996 * 119.61757 * 180.25243 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9119 5 7 2.2272 -0.5910 1.4907 6 6 2.4100 0.3269 2.6177 7 6 3.8701 0.6761 2.7495 8 1 4.5900 0.2559 2.0627 9 6 4.2871 1.5311 3.7475 10 7 3.4106 2.0424 4.5841 11 14 6.0968 1.9644 3.9104 12 1 6.5642 2.6164 2.6609 13 1 6.2823 2.8938 5.0536 14 1 6.8828 0.7268 4.1469 15 6 2.4100 -2.0319 1.6824 16 6 3.8702 -2.3764 1.5392 17 6 4.6666 -2.4578 2.6660 18 6 6.0072 -2.7807 2.5237 19 6 6.5011 -3.0009 1.2468 20 6 5.6444 -2.9021 0.1671 21 7 4.3730 -2.5973 0.3405 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8336 1.2355 2.4435 26 1 2.0666 -0.1511 3.5350 27 1 3.7039 2.6443 5.2860 28 1 1.8335 -2.5742 0.9330 29 1 2.0665 -2.3124 2.6781 30 1 4.2489 -2.2755 3.6452 31 1 6.6526 -2.8551 3.3866 32 1 7.5413 -3.2509 1.0984 33 1 6.0203 -3.0761 -0.8302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330477941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -23.845393 kcal Electronic energy + Delta-G solvation = -19410.329487 eV Core-core repulsion = 16370.941086 eV Total energy + Delta-G solvation = -3039.388401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60838 -36.32423 -35.77633 -35.06658 -32.64290 -31.83352 -30.89493 -29.05088 -27.57294 -25.31040 -22.97189 -22.40792 -21.38694 -18.11134 -16.91933 -16.67893 -16.25027 -15.77604 -15.48588 -15.24186 -14.85111 -14.49177 -13.72119 -13.22934 -13.14534 -12.88453 -12.72831 -12.62133 -12.22785 -12.06287 -11.50275 -11.47901 -11.25108 -11.06088 -10.99968 -10.67686 -10.52884 -10.35355 -9.98349 -9.74993 -9.28869 -8.85643 -8.51514 -8.36747 -8.03117 -6.04046 -4.04912 0.92169 1.65654 1.87532 3.32577 3.37001 3.40799 3.45753 4.38826 4.46134 4.60792 4.74876 4.85653 5.10380 5.23241 5.30122 5.31212 5.45165 5.51616 5.58480 5.79894 5.92521 5.96341 6.15606 6.28663 6.33462 6.66180 6.73445 7.17370 7.24433 7.38582 7.58236 7.94584 8.24196 8.61341 8.97188 9.59052 11.04778 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.011301 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.673571 B = 2477.134141 C = 3852.023636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.686 4.686 2 S 2.598 3.402 3 O -0.942 6.942 4 O -0.946 6.946 5 N -0.981 5.981 6 C 0.254 3.746 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.898 5.898 11 Si 0.889 3.111 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.187 3.813 16 C 0.119 3.881 17 C -0.124 4.124 18 C -0.088 4.088 19 C -0.181 4.181 20 C 0.085 3.915 21 N -0.454 5.454 22 H 0.124 0.876 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.039 0.961 26 H 0.036 0.964 27 H 0.262 0.738 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -9.745 -4.112 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.834 4.834 2 S 2.688 3.312 3 O -0.932 6.932 4 O -0.937 6.937 5 N -0.819 5.819 6 C 0.132 3.868 7 C -0.551 4.551 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.538 5.538 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.059 3.941 16 C -0.021 4.021 17 C -0.144 4.144 18 C -0.114 4.114 19 C -0.201 4.201 20 C -0.073 4.073 21 N -0.163 5.163 22 H 0.143 0.857 23 H 0.134 0.866 24 H 0.138 0.862 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.617 -9.269 -5.342 11.013 hybrid contribution 1.116 0.365 1.303 1.754 sum -1.500 -8.904 -4.039 9.892 Atomic orbital electron populations 1.30754 1.31663 1.10383 1.10552 1.05353 0.77144 0.74737 0.73942 1.93634 1.76276 1.37694 1.85579 1.93632 1.76456 1.61267 1.62305 1.57590 1.82368 1.12669 1.29308 1.19111 0.97522 0.87125 0.83009 1.21388 0.92946 1.27093 1.13686 0.92312 1.24858 0.97495 0.95747 0.95764 1.69898 1.33640 1.32257 1.18023 0.86690 0.85644 0.78359 0.77602 1.20182 1.21317 1.20262 1.19849 0.90183 0.81625 1.02428 1.21622 0.97782 0.94360 0.88291 1.21952 0.94217 0.97682 1.00583 1.21484 0.95624 0.96951 0.97320 1.22030 1.00712 1.03309 0.94056 1.22630 0.89421 0.96609 0.98638 1.67617 1.14110 1.09484 1.25097 0.85714 0.86556 0.86243 0.94289 0.94643 0.92801 0.89881 0.89350 0.84595 0.85616 0.85792 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -8.96 10.99 101.05 1.11 -7.85 16 2 S 2.60 48.80 5.96 -107.50 -0.64 48.16 16 3 O -0.94 -22.18 16.99 -57.54 -0.98 -23.16 16 4 O -0.95 -19.25 16.21 -57.54 -0.93 -20.18 16 5 N -0.98 -19.28 2.72 -116.95 -0.32 -19.60 16 6 C 0.25 5.98 5.04 -5.19 -0.03 5.95 16 7 C -0.51 -13.80 8.27 -34.44 -0.28 -14.09 16 8 H 0.06 1.66 7.03 -52.48 -0.37 1.29 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -25.53 13.29 55.43 0.74 -24.80 16 11 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 C 0.19 3.16 5.59 -5.19 -0.03 3.13 16 16 C 0.12 2.25 5.58 -82.58 -0.46 1.79 16 17 C -0.12 -2.21 8.62 -39.44 -0.34 -2.55 16 18 C -0.09 -1.43 10.18 -39.28 -0.40 -1.82 16 19 C -0.18 -2.77 10.11 -39.44 -0.40 -3.17 16 20 C 0.08 1.43 11.18 -17.55 -0.20 1.23 16 21 N -0.45 -8.91 9.50 -9.47 -0.09 -9.00 16 22 H 0.12 1.56 8.14 -51.92 -0.42 1.14 16 23 H 0.12 1.31 8.14 -51.92 -0.42 0.89 16 24 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 26 H 0.04 0.83 8.00 -51.93 -0.42 0.41 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.08 1.22 7.61 -51.93 -0.40 0.82 16 29 H 0.09 1.27 7.90 -51.93 -0.41 0.86 16 30 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -34.73 299.65 -7.93 -42.66 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.08 Total: 0.31 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.12 Total: -15.74 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.33 Total: -53.39 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.91 Total: -43.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 48.80 SS G_CDS: -0.64 Total: 48.16 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.73 -7.93 -42.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330477941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.812 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds