Wall clock time and date at job start Mon Mar 30 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54449 * 2 1 4 4 O 1.42101 * 110.54268 * 223.25685 * 2 1 3 5 5 N 1.65598 * 104.45060 * 111.62632 * 2 1 3 6 6 C 1.46497 * 120.00244 * 270.00103 * 5 2 1 7 7 C 1.50703 * 109.47124 * 265.00133 * 6 5 2 8 8 H 1.08004 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99921 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00065 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99865 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47484 * 59.99366 * 11 9 7 13 13 H 1.48497 * 109.47110 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46795 * 299.99221 * 11 9 7 15 15 C 1.46504 * 119.99436 * 90.00116 * 5 2 1 16 16 C 1.50707 * 109.46935 * 95.00474 * 15 5 2 17 17 C 1.38227 * 119.62059 * 95.01845 * 16 15 5 18 18 C 1.38627 * 119.15702 * 179.74122 * 17 16 15 19 19 C 1.38669 * 118.42389 * 0.47826 * 18 17 16 20 20 C 1.38186 * 119.16143 * 359.49762 * 19 18 17 21 21 N 1.31856 * 119.61137 * 274.99275 * 16 15 5 22 22 H 1.08998 * 109.46762 * 299.99616 * 1 2 3 23 23 H 1.09001 * 109.46907 * 59.99578 * 1 2 3 24 24 H 1.08994 * 109.47035 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47232 * 24.99515 * 6 5 2 26 26 H 1.08992 * 109.47302 * 145.00348 * 6 5 2 27 27 H 0.97010 * 119.99840 * 180.02562 * 10 9 7 28 28 H 1.08997 * 109.47679 * 334.99942 * 15 5 2 29 29 H 1.09003 * 109.46652 * 214.99902 * 15 5 2 30 30 H 1.07998 * 120.41916 * 359.95342 * 17 16 15 31 31 H 1.08008 * 120.78688 * 180.22921 * 18 17 16 32 32 H 1.08002 * 120.42244 * 179.78279 * 19 18 17 33 33 H 1.07996 * 119.61757 * 180.25243 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9119 5 7 2.2272 -0.5910 1.4907 6 6 2.4100 0.3269 2.6177 7 6 3.8701 0.6761 2.7495 8 1 4.5900 0.2559 2.0627 9 6 4.2871 1.5311 3.7475 10 7 3.4106 2.0424 4.5841 11 14 6.0968 1.9644 3.9104 12 1 6.5642 2.6164 2.6609 13 1 6.2823 2.8938 5.0536 14 1 6.8828 0.7268 4.1469 15 6 2.4100 -2.0319 1.6824 16 6 3.8702 -2.3764 1.5392 17 6 4.6666 -2.4578 2.6660 18 6 6.0072 -2.7807 2.5237 19 6 6.5011 -3.0009 1.2468 20 6 5.6444 -2.9021 0.1671 21 7 4.3730 -2.5973 0.3405 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8336 1.2355 2.4435 26 1 2.0666 -0.1511 3.5350 27 1 3.7039 2.6443 5.2860 28 1 1.8335 -2.5742 0.9330 29 1 2.0665 -2.3124 2.6781 30 1 4.2489 -2.2755 3.6452 31 1 6.6526 -2.8551 3.3866 32 1 7.5413 -3.2509 1.0984 33 1 6.0203 -3.0761 -0.8302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330477941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:48 Heat of formation + Delta-G solvation = -49.605937 kcal Electronic energy + Delta-G solvation = -19411.446548 eV Core-core repulsion = 16370.941086 eV Total energy + Delta-G solvation = -3040.505462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91278 -37.90045 -37.32773 -36.64378 -34.59363 -33.18091 -32.30021 -30.21004 -29.31808 -26.87426 -24.44660 -24.08132 -22.73230 -19.61993 -18.63151 -18.37107 -17.66544 -17.18222 -16.98908 -16.71813 -16.34960 -16.17090 -15.25756 -14.66622 -14.48150 -14.14878 -14.06187 -13.86083 -13.80944 -13.61354 -13.14845 -13.11879 -12.85907 -12.80735 -12.57709 -12.40777 -12.25476 -11.91344 -11.73980 -11.58072 -10.61574 -10.52739 -10.24405 -9.81559 -9.58661 -8.13397 -6.18834 -0.48178 0.35817 0.56995 1.35131 1.39255 1.45479 1.96767 2.43316 3.06189 3.18478 3.25359 3.44185 3.60257 3.93974 4.07455 4.11998 4.22836 4.27869 4.38738 4.48274 4.69879 4.86426 4.93646 4.94526 5.01859 5.28868 5.36465 5.43761 5.57400 5.77516 5.97016 6.00014 6.23101 6.86674 7.29531 7.46936 8.93838 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.011301 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.673571 B = 2477.134141 C = 3852.023636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.588 3.412 3 O -1.004 7.004 4 O -0.971 6.971 5 N -0.986 5.986 6 C 0.268 3.732 7 C -0.514 4.514 8 H 0.040 0.960 9 C 0.018 3.982 10 N -0.923 5.923 11 Si 0.934 3.066 12 H -0.290 1.290 13 H -0.279 1.279 14 H -0.262 1.262 15 C 0.179 3.821 16 C 0.096 3.904 17 C -0.141 4.141 18 C -0.096 4.096 19 C -0.174 4.174 20 C 0.067 3.933 21 N -0.486 5.486 22 H 0.137 0.863 23 H 0.144 0.856 24 H 0.155 0.845 25 H 0.021 0.979 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -10.859 -4.214 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.685 3.315 3 O -0.995 6.995 4 O -0.961 6.961 5 N -0.822 5.822 6 C 0.145 3.855 7 C -0.553 4.553 8 H 0.058 0.942 9 C -0.181 4.181 10 N -0.564 5.564 11 Si 0.761 3.239 12 H -0.216 1.216 13 H -0.204 1.204 14 H -0.187 1.187 15 C 0.052 3.948 16 C -0.043 4.043 17 C -0.162 4.162 18 C -0.122 4.122 19 C -0.194 4.194 20 C -0.090 4.090 21 N -0.196 5.196 22 H 0.156 0.844 23 H 0.162 0.838 24 H 0.173 0.827 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.167 0.833 32 H 0.178 0.822 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.887 -10.411 -5.441 12.097 hybrid contribution 1.169 0.652 1.242 1.826 sum -1.719 -9.759 -4.199 10.762 Atomic orbital electron populations 1.30372 1.23796 1.13524 1.12650 1.05281 0.79887 0.73058 0.73268 1.93560 1.79450 1.40308 1.86140 1.93598 1.78820 1.61099 1.62567 1.57385 1.83529 1.13311 1.27986 1.18701 0.95206 0.87270 0.84371 1.21585 0.94462 1.26524 1.12758 0.94212 1.25468 1.00638 0.96051 0.95903 1.69964 1.34875 1.32992 1.18591 0.85973 0.82273 0.78675 0.76999 1.21632 1.20429 1.18667 1.20163 0.89954 0.80160 1.04498 1.21914 0.98820 0.95126 0.88464 1.22092 0.95252 0.98487 1.00365 1.21874 0.95364 0.96249 0.98736 1.22398 1.02205 1.01637 0.93120 1.23156 0.89125 0.96346 1.00384 1.67611 1.15641 1.10642 1.25682 0.84414 0.83814 0.82712 0.96153 0.94387 0.92744 0.87690 0.87154 0.84756 0.83294 0.82184 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -14.56 10.99 113.37 1.25 -13.31 16 2 S 2.59 95.81 5.96 -56.49 -0.34 95.47 16 3 O -1.00 -48.44 16.99 -127.65 -2.17 -50.60 16 4 O -0.97 -39.14 16.21 -127.65 -2.07 -41.21 16 5 N -0.99 -38.37 2.72 -523.91 -1.42 -39.79 16 6 C 0.27 12.72 5.04 85.63 0.43 13.15 16 7 C -0.51 -28.09 8.27 25.60 0.21 -27.88 16 8 H 0.04 2.29 7.03 -2.91 -0.02 2.27 16 9 C 0.02 1.01 5.46 84.65 0.46 1.47 16 10 N -0.92 -52.78 13.29 21.44 0.28 -52.49 16 11 Si 0.93 44.80 29.54 68.60 2.03 46.83 16 12 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 15 C 0.18 5.90 5.59 85.63 0.48 6.38 16 16 C 0.10 3.60 5.58 42.55 0.24 3.84 16 17 C -0.14 -5.01 8.62 22.36 0.19 -4.82 16 18 C -0.10 -2.99 10.18 22.47 0.23 -2.76 16 19 C -0.17 -4.99 10.11 22.36 0.23 -4.77 16 20 C 0.07 2.20 11.18 84.67 0.95 3.15 16 21 N -0.49 -18.94 9.50 -183.88 -1.75 -20.69 16 22 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 23 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 24 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.02 1.04 7.61 -2.39 -0.02 1.03 16 26 H 0.04 1.77 8.00 -2.39 -0.02 1.75 16 27 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 28 H 0.11 2.92 7.61 -2.39 -0.02 2.90 16 29 H 0.11 3.05 7.90 -2.39 -0.02 3.03 16 30 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -76.63 299.65 0.33 -76.30 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.10 Total: 11.73 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 4.66 Total: -25.55 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -2.89 Total: -112.97 kcal Atomic # 8 Polarization: -87.57 SS G_CDS: -4.24 Total: -91.81 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 95.81 SS G_CDS: -0.34 Total: 95.47 kcal Total: -76.63 0.33 -76.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330477941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.691 kcal (2) G-P(sol) polarization free energy of solvation -76.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds