Wall clock time and date at job start Mon Mar 30 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 S 1.77235 * 127.34240 * 2 1 4 4 C 1.72205 * 94.84670 * 179.80875 * 3 2 1 5 5 O 1.21836 * 127.05583 * 180.20153 * 4 3 2 6 6 N 1.34246 * 105.88886 * 0.32178 * 4 3 2 7 7 C 1.46491 * 121.38128 * 179.88149 * 6 4 3 8 8 C 1.50702 * 109.46957 * 269.71554 * 7 6 4 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00446 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99703 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00230 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46973 * 90.00368 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00151 * 16 14 12 19 19 H 1.48504 * 109.47027 * 330.00190 * 16 14 12 20 20 C 1.32567 * 127.33957 * 179.97438 * 2 1 3 21 21 C 1.50696 * 121.64634 * 359.97438 * 20 2 1 22 22 H 1.09004 * 109.47655 * 270.00169 * 1 2 3 23 23 H 1.09008 * 109.47215 * 30.00008 * 1 2 3 24 24 H 1.08999 * 109.47301 * 149.99931 * 1 2 3 25 25 H 1.09004 * 109.47166 * 149.71820 * 7 6 4 26 26 H 1.08994 * 109.47507 * 29.71526 * 7 6 4 27 27 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 28 28 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 29 29 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 30 30 H 0.97000 * 119.99614 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.46985 * 270.02539 * 21 20 2 32 32 H 1.09000 * 109.47359 * 30.02210 * 21 20 2 33 33 H 1.08998 * 109.47459 * 150.02405 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5820 1.4091 0.0000 4 6 4.0344 0.4839 0.0057 5 8 5.1760 0.9096 0.0113 6 7 3.6507 -0.8025 0.0001 7 6 4.6312 -1.8910 0.0001 8 6 4.9674 -2.2642 -1.4208 9 8 4.4403 -1.6783 -2.3426 10 7 5.8584 -3.2449 -1.6670 11 6 6.1898 -3.6037 -3.0482 12 6 7.2020 -4.7201 -3.0483 13 1 7.5622 -5.1225 -2.1129 14 6 7.6676 -5.2286 -4.2423 15 7 7.2286 -4.7390 -5.3813 16 14 8.9218 -6.6130 -4.2423 17 1 8.2166 -7.9198 -4.2467 18 1 9.7756 -6.5073 -5.4527 19 1 9.7702 -6.5122 -3.0277 20 6 2.3110 -1.0540 0.0005 21 6 1.7706 -2.4607 0.0017 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 4.2131 -2.7566 0.5139 26 1 5.5356 -1.5653 0.5139 27 1 6.2803 -3.7134 -0.9298 28 1 5.2877 -3.9316 -3.5648 29 1 6.6058 -2.7355 -3.5593 30 1 7.5564 -5.0965 -6.2213 31 1 1.6402 -2.7990 1.0296 32 1 0.8095 -2.4812 -0.5121 33 1 2.4711 -3.1195 -0.5115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330566982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:31 Heat of formation + Delta-G solvation = -47.814029 kcal Electronic energy + Delta-G solvation = -18289.306912 eV Core-core repulsion = 15248.879153 eV Total energy + Delta-G solvation = -3040.427759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11514 -38.57656 -37.58770 -34.34280 -33.57158 -32.44500 -30.28128 -29.47046 -27.21487 -25.08037 -23.72073 -22.34033 -20.17902 -19.65028 -18.24409 -17.65191 -16.89284 -16.17398 -15.46710 -15.29005 -14.95241 -14.77495 -14.09158 -14.02273 -13.93508 -13.62327 -13.13722 -12.93817 -12.67807 -12.60943 -12.20796 -12.05342 -11.62451 -11.35992 -11.04469 -10.95353 -10.93263 -10.38503 -10.02497 -9.75085 -9.47424 -9.04873 -8.81579 -8.03515 -7.83153 -6.22263 -4.30095 0.98299 1.39544 1.75672 2.20236 2.75233 3.08929 3.20580 3.27040 3.29494 3.90536 4.30458 4.43235 4.77373 4.90727 5.04942 5.10785 5.14156 5.20813 5.25121 5.29617 5.41432 5.59790 5.71677 5.75248 6.16518 6.74090 7.18394 7.25545 7.37622 7.42132 7.56985 7.88923 8.44670 8.66344 8.91045 9.36489 10.87892 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035749 B = 0.004036 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.051767 B = 6935.654956 C = 7214.703395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.215 4.215 3 S -0.005 6.005 4 C 0.490 3.510 5 O -0.473 6.473 6 N -0.512 5.512 7 C 0.078 3.922 8 C 0.482 3.518 9 O -0.540 6.540 10 N -0.705 5.705 11 C 0.251 3.749 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.112 3.888 21 C -0.101 4.101 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.392 0.608 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.267 0.733 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 4.650 14.627 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.335 4.335 3 S 0.239 5.761 4 C 0.172 3.828 5 O -0.352 6.352 6 N -0.231 5.231 7 C -0.051 4.051 8 C 0.265 3.735 9 O -0.418 6.418 10 N -0.354 5.354 11 C 0.130 3.870 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.002 3.998 21 C -0.160 4.160 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.225 0.775 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.110 6.654 13.718 20.109 hybrid contribution 1.375 -2.351 0.099 2.725 sum -11.735 4.304 13.817 18.632 Atomic orbital electron populations 1.20072 0.85844 1.03285 1.02495 1.23364 0.99506 0.92008 1.18604 1.84893 0.98159 1.11516 1.81578 1.21430 0.94496 0.84647 0.82221 1.90960 1.19276 1.71716 1.53239 1.45518 1.05795 1.07123 1.64673 1.21810 0.94422 0.91007 0.97907 1.20533 0.81212 0.81514 0.90272 1.90717 1.52856 1.52715 1.45520 1.46422 1.41568 1.35282 1.12152 1.19153 0.96096 0.95806 0.75918 1.21196 1.25194 1.18873 0.93139 0.91788 1.24957 0.96676 0.97158 0.95169 1.69975 1.43021 1.41610 0.97564 0.86391 0.80875 0.81704 0.77814 1.20413 1.20946 1.19690 1.19202 0.81904 0.98166 1.00570 1.20780 1.02500 0.89335 1.03428 0.90882 0.90974 0.90369 0.86422 0.86220 0.77485 0.95391 0.95423 0.92352 0.89686 0.89059 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.10 36.00 0.36 -0.07 16 2 C -0.22 -2.48 6.72 -36.22 -0.24 -2.72 16 3 S 0.00 -0.07 22.97 -107.50 -2.47 -2.54 16 4 C 0.49 8.47 8.27 53.82 0.45 8.91 16 5 O -0.47 -9.60 17.55 5.07 0.09 -9.51 16 6 N -0.51 -7.73 2.09 -118.57 -0.25 -7.98 16 7 C 0.08 1.09 5.47 -5.20 -0.03 1.07 16 8 C 0.48 9.44 7.64 -10.98 -0.08 9.35 16 9 O -0.54 -13.11 16.43 5.55 0.09 -13.02 16 10 N -0.71 -14.31 5.55 -61.47 -0.34 -14.65 16 11 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 12 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 13 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -25.91 13.29 55.43 0.74 -25.18 16 16 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.11 1.39 6.59 -82.51 -0.54 0.85 16 21 C -0.10 -0.91 9.07 36.00 0.33 -0.59 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.08 0.49 6.77 -51.93 -0.35 0.14 16 25 H 0.12 1.15 6.83 -51.93 -0.35 0.79 16 26 H 0.12 1.57 7.80 -51.93 -0.40 1.16 16 27 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.68 6.69 -51.93 -0.35 0.34 16 33 H 0.08 0.82 6.70 -51.93 -0.35 0.48 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -35.22 302.47 -6.61 -41.82 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.79 Total: 0.80 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.21 Total: 10.13 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.15 Total: -47.81 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.18 Total: -22.53 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.47 Total: -2.54 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.22 -6.61 -41.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330566982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.993 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds