Wall clock time and date at job start Mon Mar 30 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 S 1.77235 * 127.34240 * 2 1 4 4 C 1.72205 * 94.84670 * 179.80875 * 3 2 1 5 5 O 1.21836 * 127.05583 * 180.20153 * 4 3 2 6 6 N 1.34246 * 105.88886 * 0.32178 * 4 3 2 7 7 C 1.46491 * 121.38128 * 179.88149 * 6 4 3 8 8 C 1.50702 * 109.46957 * 269.71554 * 7 6 4 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50694 * 109.47550 * 180.02562 * 11 10 8 13 13 H 1.08008 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00446 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99703 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00230 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46973 * 90.00368 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00151 * 16 14 12 19 19 H 1.48504 * 109.47027 * 330.00190 * 16 14 12 20 20 C 1.32567 * 127.33957 * 179.97438 * 2 1 3 21 21 C 1.50696 * 121.64634 * 359.97438 * 20 2 1 22 22 H 1.09004 * 109.47655 * 270.00169 * 1 2 3 23 23 H 1.09008 * 109.47215 * 30.00008 * 1 2 3 24 24 H 1.08999 * 109.47301 * 149.99931 * 1 2 3 25 25 H 1.09004 * 109.47166 * 149.71820 * 7 6 4 26 26 H 1.08994 * 109.47507 * 29.71526 * 7 6 4 27 27 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 28 28 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 29 29 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 30 30 H 0.97000 * 119.99614 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.46985 * 270.02539 * 21 20 2 32 32 H 1.09000 * 109.47359 * 30.02210 * 21 20 2 33 33 H 1.08998 * 109.47459 * 150.02405 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5820 1.4091 0.0000 4 6 4.0344 0.4839 0.0057 5 8 5.1760 0.9096 0.0113 6 7 3.6507 -0.8025 0.0001 7 6 4.6312 -1.8910 0.0001 8 6 4.9674 -2.2642 -1.4208 9 8 4.4403 -1.6783 -2.3426 10 7 5.8584 -3.2449 -1.6670 11 6 6.1898 -3.6037 -3.0482 12 6 7.2020 -4.7201 -3.0483 13 1 7.5622 -5.1225 -2.1129 14 6 7.6676 -5.2286 -4.2423 15 7 7.2286 -4.7390 -5.3813 16 14 8.9218 -6.6130 -4.2423 17 1 8.2166 -7.9198 -4.2467 18 1 9.7756 -6.5073 -5.4527 19 1 9.7702 -6.5122 -3.0277 20 6 2.3110 -1.0540 0.0005 21 6 1.7706 -2.4607 0.0017 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 4.2131 -2.7566 0.5139 26 1 5.5356 -1.5653 0.5139 27 1 6.2803 -3.7134 -0.9298 28 1 5.2877 -3.9316 -3.5648 29 1 6.6058 -2.7355 -3.5593 30 1 7.5564 -5.0965 -6.2213 31 1 1.6402 -2.7990 1.0296 32 1 0.8095 -2.4812 -0.5121 33 1 2.4711 -3.1195 -0.5115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330566982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:31 Heat of formation + Delta-G solvation = -74.126618 kcal Electronic energy + Delta-G solvation = -18290.447912 eV Core-core repulsion = 15248.879153 eV Total energy + Delta-G solvation = -3041.568759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30407 -40.21540 -38.80538 -36.25214 -34.62988 -34.38775 -31.46345 -30.35699 -29.02801 -26.11422 -25.19288 -24.02159 -21.72748 -20.87525 -19.33446 -19.24475 -18.16389 -17.93461 -16.98999 -16.79562 -16.56878 -16.24220 -15.71420 -14.96262 -14.88940 -14.67649 -14.52176 -14.23591 -14.06396 -13.64706 -13.48158 -13.32014 -12.96135 -12.84054 -12.71833 -12.43827 -12.25214 -11.87704 -11.53310 -11.29422 -11.16047 -10.83976 -10.38211 -9.96531 -8.89583 -8.31990 -6.49258 -0.18103 0.34525 0.74315 1.03523 1.42540 1.44941 1.51502 1.56237 1.66345 2.28552 2.49134 3.03410 3.48880 3.76103 3.78610 4.04528 4.10730 4.26819 4.57408 4.68296 4.75210 4.89956 5.03214 5.05834 5.09583 5.16958 5.39182 5.41123 5.59709 5.67115 5.79272 6.16586 6.60246 6.73575 7.18079 7.33490 8.80261 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035749 B = 0.004036 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.051767 B = 6935.654956 C = 7214.703395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.201 4.201 3 S 0.000 6.000 4 C 0.464 3.536 5 O -0.524 6.524 6 N -0.515 5.515 7 C 0.089 3.911 8 C 0.481 3.519 9 O -0.593 6.593 10 N -0.698 5.698 11 C 0.268 3.732 12 C -0.556 4.556 13 H 0.088 0.912 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.986 3.014 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.255 1.255 20 C 0.086 3.914 21 C -0.098 4.098 22 H 0.098 0.902 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.171 0.829 26 H 0.132 0.868 27 H 0.413 0.587 28 H -0.007 1.007 29 H -0.020 1.020 30 H 0.269 0.731 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 2.809 16.888 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.320 4.320 3 S 0.244 5.756 4 C 0.148 3.852 5 O -0.408 6.408 6 N -0.234 5.234 7 C -0.040 4.040 8 C 0.267 3.733 9 O -0.474 6.474 10 N -0.348 5.348 11 C 0.145 3.855 12 C -0.594 4.594 13 H 0.106 0.894 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.809 3.191 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.179 1.179 20 C -0.022 4.022 21 C -0.156 4.156 22 H 0.117 0.883 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.188 0.812 26 H 0.150 0.850 27 H 0.249 0.751 28 H 0.011 0.989 29 H -0.002 1.002 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.310 4.791 16.046 22.027 hybrid contribution 1.580 -1.695 -0.617 2.398 sum -12.730 3.096 15.429 20.241 Atomic orbital electron populations 1.20308 0.82608 1.04399 1.04479 1.24056 1.01078 0.90075 1.16804 1.84825 0.97430 1.12582 1.80800 1.21949 0.94866 0.85842 0.82575 1.90912 1.21185 1.73041 1.55658 1.45657 1.07111 1.06561 1.64033 1.21876 0.95624 0.92763 0.93695 1.21505 0.79584 0.79927 0.92320 1.90689 1.54536 1.54182 1.47970 1.46096 1.42165 1.36042 1.10501 1.18560 0.94454 0.94017 0.78442 1.21614 1.24938 1.18601 0.94259 0.89424 1.26083 0.98871 1.00026 0.94593 1.70144 1.44837 1.43572 0.98505 0.85138 0.77850 0.77984 0.78142 1.19233 1.21233 1.17902 1.19856 0.80763 1.00250 1.01362 1.20934 1.02511 0.86540 1.05662 0.88334 0.90537 0.88433 0.81191 0.84997 0.75052 0.98861 1.00188 0.92233 0.86198 0.87291 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.10 71.23 0.72 0.05 16 2 C -0.20 -4.16 6.72 24.53 0.16 -4.00 16 3 S 0.00 0.00 22.97 -56.49 -1.30 -1.30 16 4 C 0.46 16.29 8.27 129.87 1.07 17.37 16 5 O -0.52 -22.23 17.55 -4.78 -0.08 -22.31 16 6 N -0.51 -15.11 2.09 -647.51 -1.35 -16.46 16 7 C 0.09 2.37 5.47 85.64 0.47 2.84 16 8 C 0.48 19.02 7.64 87.66 0.67 19.68 16 9 O -0.59 -29.91 16.43 -3.04 -0.05 -29.96 16 10 N -0.70 -28.50 5.55 -466.79 -2.59 -31.09 16 11 C 0.27 14.59 5.43 85.63 0.46 15.06 16 12 C -0.56 -29.75 9.28 25.60 0.24 -29.51 16 13 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 16 Si 0.99 41.75 29.54 68.60 2.03 43.78 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 C 0.09 1.96 6.59 40.71 0.27 2.22 16 21 C -0.10 -1.42 9.07 71.23 0.65 -0.78 16 22 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.10 0.80 6.77 -2.39 -0.02 0.78 16 25 H 0.17 2.71 6.83 -2.38 -0.02 2.69 16 26 H 0.13 3.28 7.80 -2.39 -0.02 3.26 16 27 H 0.41 13.28 8.32 -92.71 -0.77 12.51 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 30 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 1.20 6.69 -2.39 -0.02 1.19 16 33 H 0.06 1.13 6.70 -2.39 -0.02 1.11 16 Total: -1.00 -82.23 302.47 2.49 -79.75 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.38 Total: 9.85 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 5.18 Total: 23.62 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -3.66 Total: -103.42 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.13 Total: -52.27 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.30 Total: -1.30 kcal Total: -82.23 2.49 -79.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330566982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.619 kcal (2) G-P(sol) polarization free energy of solvation -82.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds