Wall clock time and date at job start Mon Mar 30 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99614 * 2 1 4 4 C 1.50703 * 109.46750 * 85.00583 * 3 2 1 5 5 C 1.38223 * 119.62264 * 95.02018 * 4 3 2 6 6 C 1.38628 * 119.16031 * 179.97438 * 5 4 3 7 7 C 1.38672 * 118.42475 * 359.97438 * 6 5 4 8 8 C 1.38186 * 119.15778 * 0.02562 * 7 6 5 9 9 N 1.31856 * 119.61279 * 274.99490 * 4 3 2 10 10 S 1.65599 * 120.00304 * 180.02562 * 2 1 3 11 11 O 1.42101 * 104.27714 * 26.07561 * 10 2 1 12 12 O 1.42101 * 104.27794 * 153.92562 * 10 2 1 13 13 C 1.81393 * 104.45082 * 270.00127 * 10 2 1 14 14 C 1.50702 * 109.47145 * 180.02562 * 13 10 2 15 15 H 1.07994 * 120.00166 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99922 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00049 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47146 * 59.99785 * 18 16 14 20 20 H 1.48498 * 109.47076 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47200 * 299.99935 * 18 16 14 22 22 H 1.09006 * 109.47126 * 90.00163 * 1 2 3 23 23 H 1.09003 * 109.46793 * 209.99258 * 1 2 3 24 24 H 1.08993 * 109.47799 * 329.99775 * 1 2 3 25 25 H 1.08989 * 109.47587 * 325.00248 * 3 2 1 26 26 H 1.08996 * 109.46786 * 204.99656 * 3 2 1 27 27 H 1.07995 * 120.41821 * 359.95030 * 5 4 3 28 28 H 1.08006 * 120.78822 * 180.02562 * 6 5 4 29 29 H 1.07993 * 120.42192 * 179.97438 * 7 6 5 30 30 H 1.08001 * 119.60956 * 180.27218 * 8 7 6 31 31 H 1.08998 * 109.47165 * 299.99714 * 13 10 2 32 32 H 1.09008 * 109.47369 * 59.99843 * 13 10 2 33 33 H 0.96998 * 119.99788 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7656 1.4155 5 6 3.4916 1.4791 2.1265 6 6 3.6141 1.9413 3.4277 7 6 2.5708 2.6782 3.9674 8 6 1.4513 2.9252 3.1959 9 7 1.3688 2.4691 1.9612 10 16 2.2931 -1.4341 -0.0006 11 8 1.3971 -2.3558 -0.6064 12 8 3.5395 -1.1188 -0.6058 13 6 2.5194 -1.8269 1.7557 14 6 3.2706 -3.1267 1.8870 15 1 3.5805 -3.6631 1.0024 16 6 3.5614 -3.6317 3.1366 17 7 3.1835 -2.9788 4.2139 18 14 4.4919 -5.2432 3.2994 19 1 5.8194 -5.1165 2.6459 20 1 4.6773 -5.5647 4.7373 21 1 3.7194 -6.3292 2.6445 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 1.6501 2.0043 -0.5893 26 1 3.1857 1.1178 -0.4342 27 1 4.2845 0.9020 1.6742 28 1 4.5015 1.7331 4.0071 29 1 2.6320 3.0537 4.9781 30 1 0.6363 3.5021 3.6074 31 1 3.0866 -1.0297 2.2362 32 1 1.5451 -1.9198 2.2358 33 1 3.3884 -3.3339 5.0930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330822637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:02 Heat of formation + Delta-G solvation = -61.301807 kcal Electronic energy + Delta-G solvation = -19100.748854 eV Core-core repulsion = 16059.736221 eV Total energy + Delta-G solvation = -3041.012633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09796 -38.08140 -37.33420 -36.81424 -35.41853 -33.34929 -32.63107 -31.03536 -28.61902 -26.14804 -25.37925 -24.38103 -22.91969 -19.90286 -19.15709 -18.23706 -17.87113 -17.49567 -17.26401 -16.92584 -16.49809 -16.08791 -15.76670 -14.98941 -14.55785 -14.46214 -14.17604 -14.03223 -13.83082 -13.67195 -13.45222 -13.31043 -13.06543 -12.74699 -12.64492 -12.57598 -12.53632 -12.38918 -11.84031 -11.26542 -10.80978 -10.73008 -10.53090 -10.01060 -9.85632 -8.41096 -6.59932 -0.51603 0.16085 0.38805 1.36709 1.39494 1.47540 1.88139 2.30254 2.90015 2.91690 2.98086 3.33820 3.36242 3.74394 3.92680 4.05342 4.20592 4.27109 4.48851 4.54803 4.67042 4.72365 4.76320 4.80333 4.86019 4.94999 5.05328 5.25893 5.32180 5.32620 5.60362 5.70631 5.81138 6.49339 7.04245 7.11443 8.70584 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.008182 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.333334 B = 3421.437189 C = 4511.210946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.998 5.998 3 C 0.165 3.835 4 C 0.090 3.910 5 C -0.180 4.180 6 C -0.080 4.080 7 C -0.167 4.167 8 C 0.088 3.912 9 N -0.485 5.485 10 S 2.608 3.392 11 O -0.999 6.999 12 O -0.992 6.992 13 C -0.427 4.427 14 C -0.568 4.568 15 H 0.063 0.937 16 C 0.031 3.969 17 N -0.903 5.903 18 Si 0.959 3.041 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.265 1.265 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.147 0.853 29 H 0.165 0.835 30 H 0.186 0.814 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 12.564 -0.331 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.835 5.835 3 C 0.039 3.961 4 C -0.049 4.049 5 C -0.201 4.201 6 C -0.106 4.106 7 C -0.187 4.187 8 C -0.069 4.069 9 N -0.195 5.195 10 S 2.707 3.293 11 O -0.990 6.990 12 O -0.983 6.983 13 C -0.561 4.561 14 C -0.607 4.607 15 H 0.081 0.919 16 C -0.173 4.173 17 N -0.539 5.539 18 Si 0.781 3.219 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.189 1.189 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.139 0.861 26 H 0.124 0.876 27 H 0.147 0.853 28 H 0.165 0.835 29 H 0.182 0.818 30 H 0.203 0.797 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.990 12.301 -1.478 12.745 hybrid contribution 1.114 -0.947 1.548 2.129 sum -1.875 11.354 0.070 11.508 Atomic orbital electron populations 1.21598 0.77190 1.03508 1.02927 1.57374 1.15984 1.20084 1.90058 1.20342 0.99078 0.85469 0.91184 1.21775 0.90191 0.95134 0.97826 1.22253 0.99805 1.01232 0.96793 1.21898 1.00055 0.94277 0.94368 1.22501 0.94300 0.99298 1.02555 1.23317 0.97919 0.96455 0.89255 1.67464 1.28640 1.09818 1.13603 1.04993 0.72795 0.72628 0.78928 1.93435 1.65550 1.63649 1.76348 1.93419 1.45156 1.83437 1.76243 1.27825 1.05190 1.05313 1.17743 1.20692 1.39550 1.06096 0.94352 0.91916 1.25764 0.95583 1.01099 0.94848 1.70030 1.45179 1.40223 0.98484 0.85592 0.79490 0.78692 0.78142 1.18584 1.19313 1.18918 0.91070 0.92312 0.88911 0.86059 0.87560 0.85324 0.83527 0.81772 0.79667 0.89822 0.91457 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.71 10.22 127.77 1.31 4.01 16 2 N -1.00 -34.43 3.10 -543.23 -1.68 -36.11 16 3 C 0.17 4.91 5.95 85.63 0.51 5.42 16 4 C 0.09 2.77 6.36 42.55 0.27 3.04 16 5 C -0.18 -5.75 8.20 22.36 0.18 -5.56 16 6 C -0.08 -2.21 10.18 22.47 0.23 -1.99 16 7 C -0.17 -3.83 10.11 22.36 0.23 -3.60 16 8 C 0.09 2.07 11.18 84.67 0.95 3.02 16 9 N -0.49 -13.88 10.27 -183.88 -1.89 -15.77 16 10 S 2.61 115.41 5.30 -56.49 -0.30 115.12 16 11 O -1.00 -48.77 17.09 -127.65 -2.18 -50.95 16 12 O -0.99 -46.37 16.53 -127.65 -2.11 -48.48 16 13 C -0.43 -21.45 5.93 71.24 0.42 -21.02 16 14 C -0.57 -31.96 9.13 25.60 0.23 -31.72 16 15 H 0.06 3.48 7.71 -2.91 -0.02 3.46 16 16 C 0.03 1.70 5.46 84.65 0.46 2.16 16 17 N -0.90 -50.83 13.29 21.45 0.28 -50.54 16 18 Si 0.96 42.42 29.54 68.60 2.03 44.44 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.06 1.82 7.79 -2.39 -0.02 1.80 16 24 H 0.09 2.37 8.07 -2.39 -0.02 2.35 16 25 H 0.12 2.90 8.11 -2.39 -0.02 2.88 16 26 H 0.11 3.18 6.71 -2.39 -0.02 3.17 16 27 H 0.13 4.25 8.03 -2.91 -0.02 4.23 16 28 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 30 H 0.19 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.08 4.17 6.52 -2.39 -0.02 4.15 16 32 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -70.40 300.86 0.04 -70.36 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.11 Total: 18.18 kcal Atomic # 6 Polarization: -51.03 SS G_CDS: 4.79 Total: -46.24 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -3.29 Total: -102.43 kcal Atomic # 8 Polarization: -95.15 SS G_CDS: -4.29 Total: -99.44 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 115.41 SS G_CDS: -0.30 Total: 115.12 kcal Total: -70.40 0.04 -70.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330822637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.056 kcal (2) G-P(sol) polarization free energy of solvation -70.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds