Wall clock time and date at job start Mon Mar 30 2020 01:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32444 * 120.36472 * 2 1 4 4 C 1.32530 * 120.88088 * 180.25879 * 3 2 1 5 5 S 1.76195 * 119.19063 * 179.76087 * 4 3 2 6 6 C 1.81009 * 99.99991 * 179.72636 * 5 4 3 7 7 C 1.52999 * 109.46959 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47486 * 59.99958 * 7 6 5 9 9 O 1.42895 * 109.47162 * 299.99355 * 7 6 5 10 10 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 11 11 H 1.07995 * 120.00167 * 359.72054 * 10 7 6 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48492 * 109.47487 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 N 1.32555 * 121.61299 * 359.47852 * 4 3 2 19 19 C 1.32713 * 120.63760 * 0.25829 * 18 4 3 20 20 O 1.35510 * 120.46242 * 179.97438 * 19 18 4 21 21 C 1.38223 * 120.36069 * 179.75035 * 2 1 3 22 22 C 1.50695 * 120.74166 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47262 * 270.25729 * 1 2 3 24 24 H 1.09006 * 109.46895 * 30.25693 * 1 2 3 25 25 H 1.09004 * 109.47195 * 150.25171 * 1 2 3 26 26 H 1.09000 * 109.47056 * 59.99728 * 6 5 4 27 27 H 1.09001 * 109.46459 * 299.99822 * 6 5 4 28 28 H 0.96698 * 114.00355 * 300.00783 * 9 7 6 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 0.96703 * 114.00313 * 90.00070 * 20 19 18 31 31 H 1.09003 * 109.47279 * 269.98725 * 22 21 2 32 32 H 1.09001 * 109.46955 * 29.98553 * 22 21 2 33 33 H 1.09000 * 109.47003 * 149.98149 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1764 1.1428 0.0000 4 6 3.5017 1.1547 -0.0051 5 16 4.3471 2.7006 -0.0113 6 6 6.0619 2.1210 -0.0083 7 6 7.0069 3.3243 -0.0124 8 1 6.8268 3.9308 0.8752 9 8 6.7719 4.1105 -1.1823 10 6 8.4346 2.8417 -0.0093 11 1 8.6466 1.7828 -0.0003 12 6 9.4699 3.7522 -0.0126 13 7 9.2117 5.0417 -0.0180 14 14 11.2396 3.1540 -0.0095 15 1 11.2602 1.6693 -0.0027 16 1 11.9332 3.6537 -1.2238 17 1 11.9322 3.6637 1.2013 18 7 4.2067 0.0322 -0.0002 19 6 3.5994 -1.1478 0.0050 20 8 4.3236 -2.2932 0.0096 21 6 2.2056 -1.1927 0.0052 22 6 1.4773 -2.5120 0.0104 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8877 -0.5179 25 1 -0.3634 -0.8923 -0.5099 26 1 6.2419 1.5142 -0.8957 27 1 6.2412 1.5217 0.8843 28 1 6.9134 3.6337 -2.0116 29 1 9.9401 5.6822 -0.0200 30 1 4.5342 -2.6219 0.8943 31 1 1.3015 -2.8259 1.0393 32 1 0.5227 -2.4020 -0.5041 33 1 2.0810 -3.2622 -0.5004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331352506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:41 Heat of formation + Delta-G solvation = -54.124301 kcal Electronic energy + Delta-G solvation = -17925.917136 eV Core-core repulsion = 14885.215743 eV Total energy + Delta-G solvation = -3040.701393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11654 -37.72441 -35.93279 -34.81696 -32.67409 -32.19319 -29.79587 -29.22607 -27.41311 -25.34249 -23.25353 -22.74671 -21.07113 -18.92142 -18.12897 -17.25593 -16.89409 -15.72105 -14.81406 -14.66777 -14.56332 -14.36767 -14.20567 -13.84868 -13.51732 -13.34608 -13.03586 -12.93179 -12.42140 -12.28795 -11.92303 -11.53708 -11.25544 -11.03538 -10.94220 -10.58632 -10.34977 -10.14795 -9.87063 -9.57122 -9.30245 -9.12981 -8.64236 -8.32221 -7.30450 -6.07815 -4.27278 0.72834 0.98320 1.65144 2.72295 3.24659 3.32904 3.35178 3.37355 3.64910 4.13795 4.35488 4.57404 4.70790 4.75368 5.12736 5.19504 5.20523 5.33723 5.38412 5.64567 5.65986 5.77364 5.88538 6.06858 6.18614 6.21591 6.71141 6.90409 7.26051 7.54513 7.76322 7.95494 8.03124 8.74335 9.27907 9.48980 10.96396 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.004373 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.516311 B = 6401.772225 C = 7180.983724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.196 3.804 3 N -0.512 5.512 4 C 0.317 3.683 5 S 0.018 5.982 6 C -0.121 4.121 7 C 0.242 3.758 8 H 0.066 0.934 9 O -0.559 6.559 10 C -0.568 4.568 11 H 0.061 0.939 12 C 0.081 3.919 13 N -0.856 5.856 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.543 5.543 19 C 0.374 3.626 20 O -0.474 6.474 21 C -0.235 4.235 22 C -0.097 4.097 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.349 0.651 29 H 0.262 0.738 30 H 0.405 0.595 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.613 -13.696 1.506 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.047 3.953 3 N -0.231 5.231 4 C -0.057 4.057 5 S 0.258 5.742 6 C -0.270 4.270 7 C 0.183 3.817 8 H 0.084 0.916 9 O -0.362 6.362 10 C -0.607 4.607 11 H 0.079 0.921 12 C -0.126 4.126 13 N -0.492 5.492 14 Si 0.721 3.279 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.272 5.272 19 C 0.183 3.817 20 O -0.281 6.281 21 C -0.245 4.245 22 C -0.155 4.155 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.193 0.807 29 H 0.072 0.928 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.598 -10.959 1.366 19.112 hybrid contribution 1.441 -3.060 0.146 3.386 sum -14.157 -14.019 1.512 19.981 Atomic orbital electron populations 1.20815 0.87682 1.04119 1.03711 1.21535 0.97430 0.87054 0.89287 1.68448 1.07723 1.29472 1.17435 1.25430 0.89668 0.97519 0.93041 1.86341 1.03059 0.97305 1.87517 1.24923 0.90641 1.05465 1.06005 1.19272 0.90293 0.85307 0.86878 0.91599 1.86588 1.91444 1.42789 1.15339 1.21537 0.90374 0.93415 1.55409 0.92114 1.25037 0.99250 0.94727 0.93622 1.70087 1.32001 1.00590 1.46491 0.86526 0.84473 0.79109 0.77768 1.19608 1.20754 1.20780 1.68457 1.41668 0.98102 1.18940 1.19290 0.86681 0.85345 0.90393 1.84675 1.74199 1.35228 1.34028 1.21359 0.94137 0.98320 1.10692 1.20560 0.99930 0.92654 1.02365 0.89570 0.89733 0.89874 0.89711 0.89272 0.80706 0.92813 0.73589 0.91193 0.90902 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.83 36.00 0.35 -0.54 16 2 C 0.20 2.57 6.81 -82.34 -0.56 2.01 16 3 N -0.51 -8.58 10.33 -9.74 -0.10 -8.68 16 4 C 0.32 5.85 7.85 -90.86 -0.71 5.14 16 5 S 0.02 0.36 21.89 -107.50 -2.35 -1.99 16 6 C -0.12 -2.58 4.44 37.16 0.17 -2.42 16 7 C 0.24 6.10 2.87 -27.88 -0.08 6.02 16 8 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 9 O -0.56 -14.27 12.32 -35.23 -0.43 -14.71 16 10 C -0.57 -15.40 8.76 -34.44 -0.30 -15.70 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 13 N -0.86 -25.01 12.84 55.43 0.71 -24.30 16 14 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 N -0.54 -9.76 9.16 -13.50 -0.12 -9.89 16 19 C 0.37 5.49 7.80 -16.72 -0.13 5.36 16 20 O -0.47 -5.71 12.74 -18.22 -0.23 -5.94 16 21 C -0.23 -2.87 5.93 -104.18 -0.62 -3.49 16 22 C -0.10 -0.76 9.46 36.00 0.34 -0.42 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.50 6.06 -51.93 -0.31 0.19 16 26 H 0.08 1.82 8.11 -51.92 -0.42 1.40 16 27 H 0.09 1.89 8.11 -51.92 -0.42 1.47 16 28 H 0.35 7.95 9.04 45.56 0.41 8.36 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.41 2.80 9.06 45.56 0.41 3.22 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.45 6.06 -51.93 -0.31 0.14 16 33 H 0.07 0.58 7.62 -51.93 -0.40 0.19 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -33.24 301.99 -6.92 -40.16 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -2.27 Total: 6.76 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.64 Total: -1.91 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.49 Total: -42.86 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.67 Total: -20.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.35 Total: -1.99 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.24 -6.92 -40.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331352506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.969 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds