Wall clock time and date at job start Mon Mar 30 2020 01:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32444 * 120.36472 * 2 1 4 4 C 1.32530 * 120.88088 * 180.25879 * 3 2 1 5 5 S 1.76195 * 119.19063 * 179.76087 * 4 3 2 6 6 C 1.81009 * 99.99991 * 179.72636 * 5 4 3 7 7 C 1.52999 * 109.46959 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47486 * 59.99958 * 7 6 5 9 9 O 1.42895 * 109.47162 * 299.99355 * 7 6 5 10 10 C 1.50706 * 109.46573 * 179.97438 * 7 6 5 11 11 H 1.07995 * 120.00167 * 359.72054 * 10 7 6 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48492 * 109.47487 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 N 1.32555 * 121.61299 * 359.47852 * 4 3 2 19 19 C 1.32713 * 120.63760 * 0.25829 * 18 4 3 20 20 O 1.35510 * 120.46242 * 179.97438 * 19 18 4 21 21 C 1.38223 * 120.36069 * 179.75035 * 2 1 3 22 22 C 1.50695 * 120.74166 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47262 * 270.25729 * 1 2 3 24 24 H 1.09006 * 109.46895 * 30.25693 * 1 2 3 25 25 H 1.09004 * 109.47195 * 150.25171 * 1 2 3 26 26 H 1.09000 * 109.47056 * 59.99728 * 6 5 4 27 27 H 1.09001 * 109.46459 * 299.99822 * 6 5 4 28 28 H 0.96698 * 114.00355 * 300.00783 * 9 7 6 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 0.96703 * 114.00313 * 90.00070 * 20 19 18 31 31 H 1.09003 * 109.47279 * 269.98725 * 22 21 2 32 32 H 1.09001 * 109.46955 * 29.98553 * 22 21 2 33 33 H 1.09000 * 109.47003 * 149.98149 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1764 1.1428 0.0000 4 6 3.5017 1.1547 -0.0051 5 16 4.3471 2.7006 -0.0113 6 6 6.0619 2.1210 -0.0083 7 6 7.0069 3.3243 -0.0124 8 1 6.8268 3.9308 0.8752 9 8 6.7719 4.1105 -1.1823 10 6 8.4346 2.8417 -0.0093 11 1 8.6466 1.7828 -0.0003 12 6 9.4699 3.7522 -0.0126 13 7 9.2117 5.0417 -0.0180 14 14 11.2396 3.1540 -0.0095 15 1 11.2602 1.6693 -0.0027 16 1 11.9332 3.6537 -1.2238 17 1 11.9322 3.6637 1.2013 18 7 4.2067 0.0322 -0.0002 19 6 3.5994 -1.1478 0.0050 20 8 4.3236 -2.2932 0.0096 21 6 2.2056 -1.1927 0.0052 22 6 1.4773 -2.5120 0.0104 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8877 -0.5179 25 1 -0.3634 -0.8923 -0.5099 26 1 6.2419 1.5142 -0.8957 27 1 6.2412 1.5217 0.8843 28 1 6.9134 3.6337 -2.0116 29 1 9.9401 5.6822 -0.0200 30 1 4.5342 -2.6219 0.8943 31 1 1.3015 -2.8259 1.0393 32 1 0.5227 -2.4020 -0.5041 33 1 2.0810 -3.2622 -0.5004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331352506.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:40 Heat of formation + Delta-G solvation = -81.966438 kcal Electronic energy + Delta-G solvation = -17927.124461 eV Core-core repulsion = 14885.215743 eV Total energy + Delta-G solvation = -3041.908719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23516 -38.72717 -37.94486 -35.84548 -34.31411 -33.73528 -31.66926 -30.07403 -28.43775 -27.32060 -24.35251 -23.79308 -22.95878 -20.03958 -19.28579 -19.20523 -18.18873 -16.90679 -16.71702 -16.26461 -16.17873 -15.79127 -15.46726 -15.28861 -14.73709 -14.26841 -14.08444 -13.76198 -13.60530 -13.40553 -13.24074 -13.19203 -12.83582 -12.80260 -12.57502 -12.13613 -11.87177 -11.49342 -11.42421 -11.12771 -10.74987 -10.63612 -10.42336 -10.33428 -8.76496 -8.18323 -6.45508 -0.40795 -0.10114 0.22755 1.17399 1.40421 1.42123 1.54504 2.27726 2.38462 2.52164 3.08057 3.17289 3.47866 3.81880 3.92788 4.06643 4.20259 4.22960 4.29439 4.59730 4.69412 4.79276 4.88707 4.91701 5.03544 5.08204 5.45322 5.48318 5.63377 5.80117 5.94980 6.43714 6.63490 6.77646 7.26107 7.42934 8.86728 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.004373 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.516311 B = 6401.772225 C = 7180.983724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.183 3.817 3 N -0.529 5.529 4 C 0.300 3.700 5 S -0.004 6.004 6 C -0.097 4.097 7 C 0.245 3.755 8 H 0.035 0.965 9 O -0.571 6.571 10 C -0.583 4.583 11 H 0.062 0.938 12 C 0.029 3.971 13 N -0.896 5.896 14 Si 0.966 3.034 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.277 1.277 18 N -0.573 5.573 19 C 0.356 3.644 20 O -0.476 6.476 21 C -0.212 4.212 22 C -0.095 4.095 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.359 0.641 29 H 0.264 0.736 30 H 0.425 0.575 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.032 -16.433 1.529 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.035 3.965 3 N -0.249 5.249 4 C -0.075 4.075 5 S 0.234 5.766 6 C -0.246 4.246 7 C 0.185 3.815 8 H 0.053 0.947 9 O -0.375 6.375 10 C -0.622 4.622 11 H 0.080 0.920 12 C -0.174 4.174 13 N -0.533 5.533 14 Si 0.790 3.210 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.202 1.202 18 N -0.303 5.303 19 C 0.166 3.834 20 O -0.286 6.286 21 C -0.222 4.222 22 C -0.152 4.152 23 H 0.124 0.876 24 H 0.099 0.901 25 H 0.133 0.867 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.204 0.796 29 H 0.073 0.927 30 H 0.288 0.712 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.034 -13.763 1.401 21.944 hybrid contribution 1.695 -2.385 0.152 2.930 sum -15.339 -16.148 1.553 22.326 Atomic orbital electron populations 1.21003 0.84030 1.05552 1.05332 1.22398 0.99595 0.86287 0.88249 1.68413 1.06979 1.31643 1.17852 1.24898 0.90351 0.96736 0.95543 1.86162 1.01808 0.99373 1.89276 1.24361 0.91570 1.03238 1.05468 1.19026 0.90853 0.85882 0.85724 0.94727 1.86529 1.91546 1.43512 1.15955 1.21875 0.91664 0.93560 1.55114 0.91973 1.25903 1.03734 0.94725 0.93030 1.70215 1.33457 1.01888 1.47717 0.85414 0.78894 0.78806 0.77885 1.18826 1.20271 1.20210 1.68326 1.42901 0.99144 1.19902 1.19631 0.88004 0.84992 0.90767 1.84646 1.74086 1.33929 1.35955 1.21864 0.93225 1.00175 1.06915 1.20729 1.00393 0.89810 1.04296 0.87587 0.90060 0.86696 0.90146 0.89695 0.79557 0.92658 0.71194 0.88696 0.88446 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.83 71.23 0.70 -0.64 16 2 C 0.18 4.37 6.81 42.46 0.29 4.66 16 3 N -0.53 -17.46 10.33 -184.72 -1.91 -19.37 16 4 C 0.30 11.21 7.85 180.43 1.42 12.62 16 5 S 0.00 -0.16 21.89 -56.49 -1.24 -1.40 16 6 C -0.10 -4.30 4.44 71.98 0.32 -3.98 16 7 C 0.24 12.83 2.87 29.85 0.09 12.92 16 8 H 0.03 2.02 8.14 -2.39 -0.02 2.00 16 9 O -0.57 -30.25 12.32 -148.98 -1.84 -32.09 16 10 C -0.58 -32.29 8.76 25.60 0.22 -32.06 16 11 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 12 C 0.03 1.64 5.40 84.66 0.46 2.10 16 13 N -0.90 -53.47 12.84 21.45 0.28 -53.19 16 14 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 15 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 N -0.57 -20.65 9.16 -309.33 -2.83 -23.48 16 19 C 0.36 9.93 7.80 84.85 0.66 10.59 16 20 O -0.48 -10.57 12.74 -88.12 -1.12 -11.69 16 21 C -0.21 -4.59 5.93 -19.58 -0.12 -4.70 16 22 C -0.09 -1.04 9.46 71.23 0.67 -0.37 16 23 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.11 0.78 6.06 -2.38 -0.01 0.76 16 26 H 0.08 3.57 8.11 -2.39 -0.02 3.55 16 27 H 0.08 3.75 8.11 -2.39 -0.02 3.73 16 28 H 0.36 16.94 9.04 -74.06 -0.67 16.27 16 29 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.43 5.01 9.06 -74.06 -0.67 4.34 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.65 6.06 -2.39 -0.01 0.64 16 33 H 0.08 0.88 7.62 -2.39 -0.02 0.86 16 Total: -1.00 -73.84 301.99 -2.10 -75.94 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.18 Total: 18.82 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.71 Total: 1.13 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.47 Total: -96.05 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -2.96 Total: -43.78 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.24 Total: -1.40 kcal Total: -73.84 -2.10 -75.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331352506.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.026 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds