Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48498 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47158 * 299.99773 * 3 2 1 6 6 H 1.48501 * 109.47135 * 59.99783 * 3 2 1 7 7 C 1.37873 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00373 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99586 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46720 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99932 * 179.97438 * 10 9 7 12 12 O 1.21590 * 119.99715 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00119 * 179.97438 * 11 10 9 14 14 C 1.47026 * 125.64611 * 179.97438 * 13 11 10 15 15 C 1.54330 * 107.26840 * 181.02123 * 14 13 11 16 16 F 1.39901 * 110.71874 * 140.55610 * 15 14 13 17 17 F 1.39897 * 110.72023 * 263.82900 * 15 14 13 18 18 C 1.55164 * 102.94081 * 22.19556 * 15 14 13 19 19 F 1.39902 * 110.99772 * 206.42355 * 18 15 14 20 20 F 1.39893 * 111.04014 * 82.58538 * 18 15 14 21 21 C 1.47422 * 125.64887 * 359.95545 * 13 11 10 22 22 H 0.96998 * 120.00383 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47871 * 59.99982 * 9 7 2 24 24 H 1.09000 * 109.47373 * 299.99586 * 9 7 2 25 25 H 0.96996 * 120.00577 * 359.97438 * 10 9 7 26 26 H 1.08998 * 109.88351 * 300.43722 * 14 13 11 27 27 H 1.08998 * 109.88379 * 61.60512 * 14 13 11 28 28 H 1.08996 * 110.36785 * 274.74511 * 21 13 11 29 29 H 1.09004 * 110.36699 * 36.95923 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7540 -4.8833 -0.0019 12 8 0.5585 -5.1055 -0.0019 13 7 2.6298 -5.9077 -0.0022 14 6 2.2785 -7.3353 -0.0021 15 6 3.5999 -8.1323 0.0238 16 9 3.4877 -9.2497 0.8581 17 9 3.9731 -8.5138 -1.2694 18 6 4.6107 -7.1102 0.6079 19 9 5.9123 -7.3911 0.1786 20 9 4.5422 -7.0784 2.0048 21 6 4.0987 -5.7822 -0.0030 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8880 25 1 3.1568 -3.4354 -0.0010 26 1 1.6860 -7.5713 0.8819 27 1 1.7163 -7.5788 -0.9036 28 1 4.4689 -5.6659 -1.0216 29 1 4.4075 -4.9362 0.6110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334704987.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = -233.358941 kcal Electronic energy + Delta-G solvation = -21202.151511 eV Core-core repulsion = 17045.608004 eV Total energy + Delta-G solvation = -4156.543507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.98467 -49.84456 -48.97538 -48.27848 -41.29005 -38.18490 -36.23769 -34.42331 -31.78236 -30.35787 -28.97602 -25.68567 -24.33943 -23.12754 -21.55000 -20.33501 -19.79221 -18.95713 -18.47895 -18.07349 -17.81376 -17.45996 -17.07804 -16.77762 -16.35401 -15.84001 -15.56633 -15.34822 -15.04182 -15.01921 -14.89284 -14.83269 -14.61551 -14.28717 -14.06046 -13.83710 -13.77592 -13.30413 -12.86817 -12.74760 -12.22118 -12.02369 -11.48226 -11.41173 -10.82021 -10.33943 -9.72444 -8.27447 -6.43346 1.04670 1.23601 1.46919 1.47104 1.60399 1.87822 1.99103 2.11631 2.37452 2.51258 2.62305 3.04255 3.08546 3.27978 3.45063 3.98499 4.17968 4.22760 4.28390 4.67191 5.04648 5.27281 5.43443 5.53941 5.78076 5.89125 6.66929 6.95723 7.25572 7.48997 8.84782 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.034030 B = 0.004463 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.608779 B = 6272.019058 C = 6704.396615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.283 3.717 10 N -0.713 5.713 11 C 0.723 3.277 12 O -0.626 6.626 13 N -0.635 5.635 14 C 0.092 3.908 15 C 0.262 3.738 16 F -0.165 7.165 17 F -0.158 7.158 18 C 0.255 3.745 19 F -0.160 7.160 20 F -0.165 7.165 21 C 0.066 3.934 22 H 0.269 0.731 23 H -0.007 1.007 24 H -0.009 1.009 25 H 0.406 0.594 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.140 0.860 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.772 -14.406 -0.279 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.104 0.896 9 C 0.161 3.839 10 N -0.367 5.367 11 C 0.425 3.575 12 O -0.507 6.507 13 N -0.376 5.376 14 C -0.032 4.032 15 C 0.223 3.777 16 F -0.146 7.146 17 F -0.139 7.139 18 C 0.216 3.784 19 F -0.141 7.141 20 F -0.145 7.145 21 C -0.057 4.057 22 H 0.078 0.922 23 H 0.011 0.989 24 H 0.009 0.991 25 H 0.242 0.758 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.158 0.842 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.713 -14.395 -0.266 18.560 hybrid contribution 0.466 0.503 0.153 0.702 sum 12.178 -13.892 -0.113 18.475 Atomic orbital electron populations 1.70133 1.08191 1.28510 1.49951 1.26001 0.95729 1.03705 0.93942 0.85135 0.79178 0.77506 0.77538 1.17551 1.20633 1.20694 1.21608 0.94401 0.90287 1.52819 0.89628 1.18533 0.87986 0.82825 0.94597 1.45337 1.11321 1.03204 1.76808 1.15458 0.83647 0.80498 0.77889 1.90904 1.15466 1.84123 1.60164 1.46982 1.05498 1.04629 1.80495 1.22696 0.93218 0.79155 1.08129 1.22328 0.95963 0.83456 0.75929 1.93126 1.96603 1.54209 1.70658 1.93141 1.92285 1.91987 1.36449 1.22576 0.80617 0.97321 0.77847 1.93129 1.37594 1.94301 1.89063 1.93131 1.96097 1.96999 1.28287 1.23449 0.80484 0.95821 1.05981 0.92249 0.98914 0.99072 0.75787 0.86865 0.86413 0.84188 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.29 21.45 0.28 -54.00 15 2 C 0.01 0.33 5.46 84.65 0.46 0.79 15 3 Si 0.98 40.80 29.54 68.60 2.03 42.82 15 4 H -0.25 -9.59 7.11 99.48 0.71 -8.88 15 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 15 6 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.55 -28.59 9.28 25.60 0.24 -28.35 15 8 H 0.09 3.95 7.60 -2.91 -0.02 3.93 15 9 C 0.28 14.78 5.43 85.63 0.46 15.24 15 10 N -0.71 -28.27 5.51 -482.29 -2.66 -30.92 15 11 C 0.72 27.75 8.49 179.05 1.52 29.27 15 12 O -0.63 -29.99 16.67 -4.00 -0.07 -30.06 15 13 N -0.64 -17.00 3.33 -829.78 -2.76 -19.76 15 14 C 0.09 2.05 6.51 86.73 0.56 2.62 15 15 C 0.26 5.14 2.36 31.79 0.08 5.21 15 16 F -0.17 -3.45 16.92 44.97 0.76 -2.69 15 17 F -0.16 -3.09 16.91 44.97 0.76 -2.33 15 18 C 0.26 4.90 2.42 31.98 0.08 4.97 15 19 F -0.16 -3.03 16.96 44.97 0.76 -2.27 15 20 F -0.16 -3.63 16.97 44.97 0.76 -2.87 15 21 C 0.07 1.22 6.20 86.85 0.54 1.76 15 22 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 15 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 15 25 H 0.41 12.90 6.80 -92.71 -0.63 12.27 15 26 H 0.11 2.52 8.10 -2.39 -0.02 2.50 15 27 H 0.12 2.47 8.11 -2.39 -0.02 2.45 15 28 H 0.14 1.91 8.14 -2.39 -0.02 1.89 15 29 H 0.13 2.11 7.29 -2.38 -0.02 2.09 15 Total: -1.00 -67.48 274.16 4.40 -63.08 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.58 Total: 7.47 kcal Atomic # 6 Polarization: 27.57 SS G_CDS: 3.94 Total: 31.51 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.13 Total: -104.68 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.07 Total: -30.06 kcal Atomic # 9 Polarization: -13.20 SS G_CDS: 3.05 Total: -10.15 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -67.48 4.40 -63.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334704987.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.275 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds