Wall clock time and date at job start Mon Mar 30 2020 02:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36342 * 125.63618 * 2 1 4 4 C 1.34849 * 108.21844 * 179.97438 * 3 2 1 5 5 C 1.40888 * 107.41915 * 359.76519 * 4 3 2 6 6 C 1.34850 * 107.41432 * 0.38091 * 5 4 3 7 7 S 1.76203 * 125.89145 * 179.88026 * 6 5 4 8 8 O 1.42101 * 106.40308 * 156.14948 * 7 6 5 9 9 O 1.42104 * 106.39815 * 23.23686 * 7 6 5 10 10 N 1.65594 * 107.22142 * 269.69631 * 7 6 5 11 11 C 1.36940 * 120.00414 * 89.99892 * 10 7 6 12 12 H 1.08002 * 119.99970 * 231.31672 * 11 10 7 13 13 C 1.38812 * 119.99712 * 51.31068 * 11 10 7 14 14 N 1.31613 * 120.00027 * 23.83881 * 13 11 10 15 15 Si 1.86803 * 119.99752 * 203.84043 * 13 11 10 16 16 H 1.48494 * 109.47098 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.46937 * 300.00291 * 15 13 11 18 18 H 1.48505 * 109.47106 * 60.00125 * 15 13 11 19 19 C 1.46505 * 119.99852 * 269.99534 * 10 7 6 20 20 C 1.52994 * 117.49722 * 183.44621 * 19 10 7 21 21 C 1.53003 * 117.49664 * 114.78675 * 19 10 7 22 22 H 1.09003 * 109.47041 * 270.02356 * 1 2 3 23 23 H 1.09000 * 109.47021 * 30.02015 * 1 2 3 24 24 H 1.08994 * 109.47236 * 150.02941 * 1 2 3 25 25 H 1.08006 * 125.89014 * 359.93940 * 3 2 1 26 26 H 1.08006 * 126.28966 * 180.02562 * 4 3 2 27 27 H 1.07994 * 126.29566 * 180.24193 * 5 4 3 28 28 H 0.97008 * 119.99744 * 174.94911 * 14 13 11 29 29 H 1.08997 * 115.54918 * 329.12383 * 19 10 7 30 30 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 31 31 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 32 32 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 33 33 H 1.08997 * 117.49884 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 0.0006 5 6 3.5461 -0.7044 0.0064 6 6 2.2594 -1.1081 0.0007 7 16 1.7011 -2.7793 0.0014 8 8 0.3886 -2.7636 0.5458 9 8 2.7592 -3.5555 0.5464 10 7 1.5459 -3.2451 -1.5800 11 6 2.6065 -3.8135 -2.2337 12 1 2.9211 -3.4260 -3.1915 13 6 3.2774 -4.8875 -1.6652 14 7 2.6671 -5.6541 -0.7866 15 14 5.0465 -5.2447 -2.1471 16 1 5.5313 -6.4352 -1.4037 17 1 5.1182 -5.5087 -3.6066 18 1 5.8965 -4.0735 -1.8136 19 6 0.2739 -3.0491 -2.2799 20 6 0.1683 -3.5731 -3.7135 21 6 0.2571 -2.0673 -3.4533 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5133 25 1 1.9172 2.1325 -0.0009 26 1 4.4166 1.3437 0.0011 27 1 4.4165 -1.3437 0.0120 28 1 3.1095 -6.4467 -0.4442 29 1 -0.6188 -3.1041 -1.6569 30 1 1.0451 -4.0640 -4.1357 31 1 -0.7940 -3.9726 -4.0337 32 1 -0.6468 -1.4767 -3.6024 33 1 1.1923 -1.5668 -3.7041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334816738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:11 Heat of formation + Delta-G solvation = 18.891386 kcal Electronic energy + Delta-G solvation = -19886.786896 eV Core-core repulsion = 16849.251701 eV Total energy + Delta-G solvation = -3037.535195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44999 -37.18710 -35.71062 -34.15627 -33.29647 -32.29055 -30.63295 -28.44967 -25.91959 -24.94057 -21.65728 -20.71617 -20.36553 -20.00371 -18.77572 -17.49287 -16.30710 -16.00383 -15.21284 -14.69717 -14.55141 -14.17753 -13.93603 -13.55308 -12.97268 -12.82752 -12.36027 -11.98104 -11.83560 -11.69835 -11.64782 -11.42799 -11.09671 -10.86562 -10.66096 -10.43706 -10.35982 -10.30113 -9.98880 -9.86067 -9.37984 -8.69540 -8.11194 -7.92958 -7.53298 -6.52058 -4.17918 1.90526 2.50485 3.22682 3.30084 3.32094 3.41342 3.43870 4.13034 4.57611 4.69110 4.94048 5.16152 5.26579 5.37759 5.58122 5.66718 5.71486 5.77325 5.88561 5.93958 6.07761 6.24019 6.26536 6.39203 6.61019 6.69662 6.76999 6.95490 7.35300 7.42978 7.52498 7.64094 7.78122 8.20974 8.89703 9.31612 10.53679 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.010366 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.079393 B = 2700.473553 C = 3238.748199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.401 5.401 3 C -0.002 4.002 4 C -0.223 4.223 5 C -0.105 4.105 6 C -0.527 4.527 7 S 2.584 3.416 8 O -1.017 7.017 9 O -0.938 6.938 10 N -0.786 5.786 11 C -0.286 4.286 12 H 0.081 0.919 13 C 0.065 3.935 14 N -0.781 5.781 15 Si 0.924 3.076 16 H -0.281 1.281 17 H -0.273 1.273 18 H -0.265 1.265 19 C 0.095 3.905 20 C -0.160 4.160 21 C -0.215 4.215 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.158 0.842 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.281 0.719 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 8.017 -3.222 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.074 5.074 3 C -0.137 4.137 4 C -0.249 4.249 5 C -0.132 4.132 6 C -0.713 4.713 7 S 2.681 3.319 8 O -1.006 7.006 9 O -0.926 6.926 10 N -0.608 5.608 11 C -0.433 4.433 12 H 0.098 0.902 13 C -0.153 4.153 14 N -0.416 5.416 15 Si 0.749 3.251 16 H -0.206 1.206 17 H -0.198 1.198 18 H -0.190 1.190 19 C -0.014 4.014 20 C -0.199 4.199 21 C -0.255 4.255 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.176 0.824 26 H 0.151 0.849 27 H 0.160 0.840 28 H 0.091 0.909 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.371 7.598 -2.037 8.558 hybrid contribution 1.164 0.681 -0.316 1.385 sum -2.208 8.279 -2.354 8.886 Atomic orbital electron populations 1.22223 0.77042 1.04484 1.03821 1.43582 1.05702 1.04743 1.53375 1.22035 0.91114 0.91600 1.08928 1.20995 0.95770 0.95349 1.12772 1.20795 0.95264 0.94797 1.02317 1.34858 0.99291 1.16493 1.20697 1.09813 0.73076 0.72455 0.76532 1.93274 1.40109 1.87547 1.79674 1.93442 1.56896 1.64678 1.77588 1.52335 1.13248 1.63945 1.31279 1.18868 1.08316 1.10633 1.05444 0.90152 1.25727 1.00210 0.94164 0.95249 1.69810 1.37605 1.10455 1.23729 0.86054 0.82325 0.78545 0.78158 1.20588 1.19788 1.19015 1.21393 0.88634 1.02576 0.88798 1.23058 1.02766 0.95426 0.98618 1.23379 1.02105 0.93091 1.06955 0.90651 0.90403 0.88453 0.82443 0.84914 0.84039 0.90880 0.86685 0.87261 0.89742 0.89910 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.18 59.85 0.61 1.66 16 2 N -0.40 -7.71 3.15 -123.55 -0.39 -8.10 16 3 C 0.00 -0.03 11.43 -16.75 -0.19 -0.22 16 4 C -0.22 -4.08 10.86 -39.78 -0.43 -4.51 16 5 C -0.11 -2.28 10.59 -39.78 -0.42 -2.70 16 6 C -0.53 -11.92 6.96 -16.75 -0.12 -12.03 16 7 S 2.58 65.65 5.39 -107.50 -0.58 65.07 16 8 O -1.02 -26.27 14.57 -57.17 -0.83 -27.11 16 9 O -0.94 -26.89 14.10 -57.17 -0.81 -27.69 16 10 N -0.79 -18.97 3.02 -53.42 -0.16 -19.13 16 11 C -0.29 -7.11 7.72 -15.06 -0.12 -7.23 16 12 H 0.08 1.89 7.64 -52.49 -0.40 1.49 16 13 C 0.07 1.68 4.04 -17.43 -0.07 1.61 16 14 N -0.78 -21.53 11.74 55.49 0.65 -20.88 16 15 Si 0.92 20.17 29.62 -169.99 -5.03 15.14 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 C 0.10 1.95 6.15 -67.93 -0.42 1.54 16 20 C -0.16 -2.84 9.83 -26.70 -0.26 -3.10 16 21 C -0.22 -3.67 10.36 -26.69 -0.28 -3.94 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.10 1.67 6.48 -51.93 -0.34 1.34 16 25 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 26 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 27 H 0.14 3.06 8.06 -52.49 -0.42 2.63 16 28 H 0.28 7.29 8.32 -40.82 -0.34 6.95 16 29 H 0.12 2.31 7.46 -51.93 -0.39 1.92 16 30 H 0.11 2.08 6.89 -51.93 -0.36 1.72 16 31 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -31.86 292.70 -8.44 -40.30 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.00 Total: 6.94 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -1.70 Total: -28.95 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.10 Total: -48.11 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -1.64 Total: -54.80 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: 65.65 SS G_CDS: -0.58 Total: 65.07 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.86 -8.44 -40.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.189 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds