Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36342 * 125.63618 * 2 1 4 4 C 1.34849 * 108.21844 * 179.97438 * 3 2 1 5 5 C 1.40888 * 107.41915 * 359.76519 * 4 3 2 6 6 C 1.34850 * 107.41432 * 0.38091 * 5 4 3 7 7 S 1.76203 * 125.89145 * 179.88026 * 6 5 4 8 8 O 1.42101 * 106.40308 * 156.14948 * 7 6 5 9 9 O 1.42104 * 106.39815 * 23.23686 * 7 6 5 10 10 N 1.65594 * 107.22142 * 269.69631 * 7 6 5 11 11 C 1.36940 * 120.00414 * 89.99892 * 10 7 6 12 12 H 1.08002 * 119.99970 * 231.31672 * 11 10 7 13 13 C 1.38812 * 119.99712 * 51.31068 * 11 10 7 14 14 N 1.31613 * 120.00027 * 23.83881 * 13 11 10 15 15 Si 1.86803 * 119.99752 * 203.84043 * 13 11 10 16 16 H 1.48494 * 109.47098 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.46937 * 300.00291 * 15 13 11 18 18 H 1.48505 * 109.47106 * 60.00125 * 15 13 11 19 19 C 1.46505 * 119.99852 * 269.99534 * 10 7 6 20 20 C 1.52994 * 117.49722 * 183.44621 * 19 10 7 21 21 C 1.53003 * 117.49664 * 114.78675 * 19 10 7 22 22 H 1.09003 * 109.47041 * 270.02356 * 1 2 3 23 23 H 1.09000 * 109.47021 * 30.02015 * 1 2 3 24 24 H 1.08994 * 109.47236 * 150.02941 * 1 2 3 25 25 H 1.08006 * 125.89014 * 359.93940 * 3 2 1 26 26 H 1.08006 * 126.28966 * 180.02562 * 4 3 2 27 27 H 1.07994 * 126.29566 * 180.24193 * 5 4 3 28 28 H 0.97008 * 119.99744 * 174.94911 * 14 13 11 29 29 H 1.08997 * 115.54918 * 329.12383 * 19 10 7 30 30 H 1.08995 * 117.50178 * 0.02562 * 20 19 10 31 31 H 1.09007 * 117.49403 * 145.02296 * 20 19 10 32 32 H 1.08999 * 117.50007 * 214.98135 * 21 19 10 33 33 H 1.08997 * 117.49884 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 0.0006 5 6 3.5461 -0.7044 0.0064 6 6 2.2594 -1.1081 0.0007 7 16 1.7011 -2.7793 0.0014 8 8 0.3886 -2.7636 0.5458 9 8 2.7592 -3.5555 0.5464 10 7 1.5459 -3.2451 -1.5800 11 6 2.6065 -3.8135 -2.2337 12 1 2.9211 -3.4260 -3.1915 13 6 3.2774 -4.8875 -1.6652 14 7 2.6671 -5.6541 -0.7866 15 14 5.0465 -5.2447 -2.1471 16 1 5.5313 -6.4352 -1.4037 17 1 5.1182 -5.5087 -3.6066 18 1 5.8965 -4.0735 -1.8136 19 6 0.2739 -3.0491 -2.2799 20 6 0.1683 -3.5731 -3.7135 21 6 0.2571 -2.0673 -3.4533 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5133 25 1 1.9172 2.1325 -0.0009 26 1 4.4166 1.3437 0.0011 27 1 4.4165 -1.3437 0.0120 28 1 3.1095 -6.4467 -0.4442 29 1 -0.6188 -3.1041 -1.6569 30 1 1.0451 -4.0640 -4.1357 31 1 -0.7940 -3.9726 -4.0337 32 1 -0.6468 -1.4767 -3.6024 33 1 1.1923 -1.5668 -3.7041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334816738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = -2.414301 kcal Electronic energy + Delta-G solvation = -19887.710780 eV Core-core repulsion = 16849.251701 eV Total energy + Delta-G solvation = -3038.459079 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91926 -38.78393 -37.71739 -36.19362 -35.10949 -33.70118 -32.46083 -29.96197 -27.25358 -26.82183 -23.05893 -22.36731 -22.01086 -21.42128 -20.63537 -19.07972 -18.14184 -17.70628 -17.08235 -16.23397 -16.12886 -15.91013 -15.52593 -15.26811 -14.53973 -14.15836 -14.09648 -13.57177 -13.31758 -13.26083 -13.13041 -13.08171 -12.90568 -12.57510 -12.42128 -12.31453 -12.15001 -12.07937 -11.70709 -11.58831 -10.96448 -10.57085 -9.59438 -9.45753 -9.29470 -8.43258 -6.13264 0.04459 0.93548 1.45672 1.55128 1.58183 1.94821 2.05092 2.33087 2.82751 3.00842 3.18854 3.47270 3.93152 4.03903 4.16952 4.24220 4.34895 4.36554 4.41925 4.56174 4.63583 4.78463 4.87190 4.93099 5.18347 5.18972 5.26348 5.46185 5.53739 5.80042 5.91504 6.07452 6.27387 6.45276 7.01746 7.43606 8.62565 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.010366 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.079393 B = 2700.473553 C = 3238.748199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.404 5.404 3 C 0.025 3.975 4 C -0.235 4.235 5 C -0.125 4.125 6 C -0.565 4.565 7 S 2.593 3.407 8 O -1.033 7.033 9 O -0.984 6.984 10 N -0.798 5.798 11 C -0.293 4.293 12 H 0.090 0.910 13 C 0.021 3.979 14 N -0.829 5.829 15 Si 0.972 3.028 16 H -0.283 1.283 17 H -0.245 1.245 18 H -0.270 1.270 19 C 0.054 3.946 20 C -0.152 4.152 21 C -0.183 4.183 22 H 0.079 0.921 23 H 0.128 0.872 24 H 0.078 0.922 25 H 0.214 0.786 26 H 0.164 0.836 27 H 0.125 0.875 28 H 0.278 0.722 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 10.980 -4.747 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.077 5.077 3 C -0.111 4.111 4 C -0.259 4.259 5 C -0.153 4.153 6 C -0.756 4.756 7 S 2.695 3.305 8 O -1.023 7.023 9 O -0.972 6.972 10 N -0.621 5.621 11 C -0.438 4.438 12 H 0.108 0.892 13 C -0.193 4.193 14 N -0.465 5.465 15 Si 0.794 3.206 16 H -0.209 1.209 17 H -0.169 1.169 18 H -0.195 1.195 19 C -0.054 4.054 20 C -0.191 4.191 21 C -0.222 4.222 22 H 0.098 0.902 23 H 0.147 0.853 24 H 0.097 0.903 25 H 0.231 0.769 26 H 0.182 0.818 27 H 0.143 0.857 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.962 10.505 -3.607 11.793 hybrid contribution 1.254 -0.040 0.188 1.269 sum -2.708 10.465 -3.419 11.337 Atomic orbital electron populations 1.22519 0.75274 1.06118 1.04693 1.43861 1.06912 1.04296 1.52593 1.22907 0.90254 0.93036 1.04876 1.21387 0.97912 0.93696 1.12884 1.20967 0.94591 0.96960 1.02816 1.34065 1.00369 1.16379 1.24753 1.08724 0.72103 0.73040 0.76640 1.93234 1.40572 1.88255 1.80237 1.93382 1.58119 1.66958 1.78782 1.52235 1.14380 1.64615 1.30873 1.19115 1.08684 1.10338 1.05697 0.89230 1.26591 1.03461 0.94086 0.95123 1.69899 1.39137 1.11393 1.26027 0.85317 0.77932 0.77906 0.79397 1.20864 1.16850 1.19509 1.21638 0.87094 1.06799 0.89905 1.23138 1.03648 0.96358 0.95963 1.23382 1.03288 0.92751 1.02827 0.90232 0.85330 0.90306 0.76937 0.81832 0.85687 0.91249 0.87033 0.88806 0.86820 0.86255 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.57 10.18 127.77 1.30 2.87 16 2 N -0.40 -14.51 3.15 -544.80 -1.72 -16.23 16 3 C 0.03 0.74 11.43 83.21 0.95 1.69 16 4 C -0.23 -7.88 10.86 22.14 0.24 -7.64 16 5 C -0.13 -5.44 10.59 22.14 0.23 -5.21 16 6 C -0.56 -25.50 6.96 83.21 0.58 -24.92 16 7 S 2.59 136.16 5.39 -56.49 -0.30 135.86 16 8 O -1.03 -55.05 14.57 -128.00 -1.87 -56.92 16 9 O -0.98 -59.38 14.10 -128.00 -1.80 -61.19 16 10 N -0.80 -39.34 3.02 -322.93 -0.97 -40.31 16 11 C -0.29 -14.88 7.72 84.03 0.65 -14.23 16 12 H 0.09 4.25 7.64 -2.91 -0.02 4.23 16 13 C 0.02 1.14 4.04 84.86 0.34 1.48 16 14 N -0.83 -47.78 11.74 21.65 0.25 -47.53 16 15 Si 0.97 42.01 29.62 68.60 2.03 44.04 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.24 -9.39 7.11 99.48 0.71 -8.69 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 C 0.05 2.19 6.15 44.99 0.28 2.47 16 20 C -0.15 -5.18 9.83 30.62 0.30 -4.88 16 21 C -0.18 -5.78 10.36 30.62 0.32 -5.47 16 22 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.08 2.60 6.48 -2.39 -0.02 2.58 16 25 H 0.21 3.80 8.06 -2.91 -0.02 3.77 16 26 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 27 H 0.13 5.64 8.06 -2.91 -0.02 5.62 16 28 H 0.28 15.24 8.32 -92.70 -0.77 14.47 16 29 H 0.11 4.52 7.46 -2.39 -0.02 4.50 16 30 H 0.09 3.50 6.89 -2.39 -0.02 3.49 16 31 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -72.96 292.70 1.92 -71.03 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 1.11 Total: 25.08 kcal Atomic # 6 Polarization: -59.03 SS G_CDS: 5.19 Total: -53.84 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -2.43 Total: -104.07 kcal Atomic # 8 Polarization: -114.44 SS G_CDS: -3.67 Total: -118.11 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 136.16 SS G_CDS: -0.30 Total: 135.86 kcal Total: -72.96 1.92 -71.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334816738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.619 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds