Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 5 5 C 1.36931 * 119.99788 * 274.99780 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48508 * 109.46872 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47141 * 119.99997 * 9 7 5 12 12 H 1.48498 * 109.47018 * 240.00044 * 9 7 5 13 13 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 14 14 C 1.38261 * 119.99993 * 279.73371 * 13 2 1 15 15 C 1.38219 * 119.99826 * 179.76896 * 14 13 2 16 16 C 1.38264 * 119.99742 * 0.47766 * 15 14 13 17 17 C 1.38208 * 119.99939 * 359.79445 * 16 15 14 18 18 S 1.76199 * 120.00007 * 179.97438 * 17 16 15 19 19 N 1.65604 * 107.21915 * 269.98258 * 18 17 16 20 20 O 1.42107 * 106.39924 * 23.51940 * 18 17 16 21 21 O 1.42098 * 106.40517 * 156.43927 * 18 17 16 22 22 C 1.38213 * 120.00116 * 100.00477 * 13 2 1 23 23 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 25 25 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 26 26 H 0.97000 * 119.99792 * 94.99575 * 4 2 1 27 27 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 28 28 H 1.07996 * 120.00530 * 359.97438 * 14 13 2 29 29 H 1.07997 * 120.00109 * 180.25651 * 15 14 13 30 30 H 1.08002 * 119.99778 * 179.77137 * 16 15 14 31 31 H 0.97001 * 119.99898 * 149.99642 * 19 18 17 32 32 H 0.96994 * 119.99864 * 329.99886 * 19 18 17 33 33 H 1.08003 * 119.99464 * 0.02562 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6062 -0.6633 3.5106 8 7 2.9191 -1.9403 3.4515 9 14 2.7773 0.2668 5.1216 10 1 2.3647 1.6796 4.9237 11 1 1.9116 -0.3627 6.1509 12 1 4.1921 0.2230 5.5706 13 6 2.0324 -0.7105 -1.2304 14 6 2.0720 -2.0921 -1.2631 15 6 2.5282 -2.7439 -2.3933 16 6 2.9543 -2.0139 -3.4876 17 6 2.9200 -0.6327 -3.4527 18 16 3.4636 0.2976 -4.8469 19 7 5.0834 0.5784 -4.6474 20 8 3.3408 -0.5595 -5.9737 21 8 2.8231 1.5630 -4.7595 22 6 2.4588 0.0191 -2.3240 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8898 25 1 -0.3632 0.5139 -0.8901 26 1 2.2489 -1.6318 1.1527 27 1 3.2389 -2.3985 4.2445 28 1 1.7433 -2.6623 -0.4068 29 1 2.5553 -3.8232 -2.4205 30 1 3.3143 -2.5231 -4.3694 31 1 5.6592 0.6679 -5.4229 32 1 5.4563 0.6535 -3.7552 33 1 2.4324 1.0985 -2.2966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336679410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = -42.649078 kcal Electronic energy + Delta-G solvation = -18322.070352 eV Core-core repulsion = 15281.866562 eV Total energy + Delta-G solvation = -3040.203790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.36871 -37.18757 -35.87273 -35.55831 -33.30215 -32.45517 -31.15727 -29.95038 -28.18523 -24.28412 -23.48658 -22.47881 -20.59324 -19.35506 -17.97666 -17.47246 -17.30417 -16.66553 -15.83072 -15.43197 -15.01475 -14.52064 -14.21658 -13.64387 -13.31937 -13.26146 -12.58495 -12.29359 -12.20922 -12.13375 -12.10711 -12.03428 -11.72928 -11.34909 -10.96409 -10.91856 -10.75048 -10.49501 -10.36632 -10.06853 -9.76875 -9.23184 -9.07764 -8.62816 -7.09630 -5.87092 -3.16436 0.37442 0.93801 1.44089 3.09348 3.37501 3.43647 3.45632 3.48827 3.82135 4.43953 4.53669 4.93778 4.97168 5.22254 5.40625 5.45831 5.50449 5.63074 5.80332 5.84559 5.98690 6.06566 6.14307 6.25021 6.37122 6.47110 6.56967 6.81215 6.89379 6.92896 7.03481 7.62291 8.30834 9.42693 9.96123 10.31482 11.35646 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030238 B = 0.004470 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.762117 B = 6263.146744 C = 6429.324052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.204 3.796 3 H 0.061 0.939 4 N -0.722 5.722 5 C -0.241 4.241 6 H 0.073 0.927 7 C -0.011 4.011 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.291 1.291 13 C -0.085 4.085 14 C -0.044 4.044 15 C -0.140 4.140 16 C -0.032 4.032 17 C -0.678 4.678 18 S 2.705 3.295 19 N -1.250 6.250 20 O -0.970 6.970 21 O -0.965 6.965 22 C -0.022 4.022 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.384 0.616 27 H 0.256 0.744 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.418 0.582 32 H 0.419 0.581 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 1.349 -15.232 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.094 3.906 3 H 0.079 0.921 4 N -0.364 5.364 5 C -0.372 4.372 6 H 0.091 0.909 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.218 1.218 13 C -0.087 4.087 14 C -0.063 4.063 15 C -0.159 4.159 16 C -0.051 4.051 17 C -0.767 4.767 18 S 2.795 3.205 19 N -0.923 5.923 20 O -0.960 6.960 21 O -0.954 6.954 22 C -0.042 4.042 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.219 0.781 27 H 0.066 0.934 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.248 0.752 32 H 0.246 0.754 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.888 1.733 -15.823 16.029 hybrid contribution 0.668 -0.313 1.774 1.921 sum 2.556 1.420 -14.049 14.350 Atomic orbital electron populations 1.22439 0.97960 1.01263 1.00520 1.19263 0.92369 0.95153 0.83783 0.92148 1.42523 1.78305 1.10650 1.04970 1.19294 1.36874 0.94066 0.86957 0.90868 1.24745 1.01900 0.95980 0.98132 1.69661 1.50844 1.08695 1.28901 0.86101 0.77329 0.78836 0.83812 1.20457 1.21808 1.21830 1.20623 0.97678 0.94209 0.96196 1.21493 0.92885 0.94594 0.97289 1.21286 1.00746 1.00289 0.93593 1.20799 0.94471 0.91678 0.98187 1.30392 1.20434 1.06990 1.18859 1.01344 0.72312 0.73811 0.73082 1.53140 1.29604 1.92454 1.17123 1.93573 1.85548 1.67812 1.49077 1.93605 1.73991 1.41471 1.86316 1.20832 0.92582 1.00163 0.90645 0.93300 0.92093 0.94065 0.78098 0.93449 0.84622 0.85196 0.84648 0.75241 0.75373 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.47 37.16 0.35 -2.51 16 2 C 0.20 3.93 3.09 -69.08 -0.21 3.72 16 3 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 4 N -0.72 -17.22 5.07 -54.55 -0.28 -17.50 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16 9 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.09 -1.43 4.96 -104.62 -0.52 -1.95 16 14 C -0.04 -0.70 9.06 -39.58 -0.36 -1.06 16 15 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 16 C -0.03 -0.41 9.52 -39.58 -0.38 -0.78 16 17 C -0.68 -8.89 5.97 -39.59 -0.24 -9.12 16 18 S 2.70 31.08 6.28 -107.50 -0.68 30.41 16 19 N -1.25 -9.53 9.52 60.35 0.57 -8.96 16 20 O -0.97 -13.38 17.28 -57.17 -0.99 -14.36 16 21 O -0.96 -14.13 17.28 -57.17 -0.99 -15.12 16 22 C -0.02 -0.33 9.14 -39.58 -0.36 -0.69 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.38 9.56 6.05 -40.82 -0.25 9.31 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.14 2.25 6.90 -52.49 -0.36 1.89 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.14 1.43 7.62 -52.49 -0.40 1.03 16 31 H 0.42 2.31 8.96 -34.47 -0.31 2.00 16 32 H 0.42 2.61 8.96 -34.47 -0.31 2.30 16 33 H 0.14 1.88 7.60 -52.48 -0.40 1.48 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -34.13 298.73 -8.18 -42.31 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -3.67 Total: 10.12 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.36 Total: -21.67 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 1.02 Total: -52.93 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.98 Total: -29.48 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 31.08 SS G_CDS: -0.68 Total: 30.41 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.13 -8.18 -42.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336679410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.338 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds