Wall clock time and date at job start Mon Mar 30 2020 01:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 5 5 C 1.36931 * 119.99788 * 274.99780 * 4 2 1 6 6 H 1.08002 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99680 * 179.72358 * 5 4 2 8 8 N 1.31614 * 119.99888 * 0.27479 * 7 5 4 9 9 Si 1.86803 * 119.99862 * 180.27671 * 7 5 4 10 10 H 1.48508 * 109.46872 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47141 * 119.99997 * 9 7 5 12 12 H 1.48498 * 109.47018 * 240.00044 * 9 7 5 13 13 C 1.50696 * 109.47149 * 239.99505 * 2 1 3 14 14 C 1.38261 * 119.99993 * 279.73371 * 13 2 1 15 15 C 1.38219 * 119.99826 * 179.76896 * 14 13 2 16 16 C 1.38264 * 119.99742 * 0.47766 * 15 14 13 17 17 C 1.38208 * 119.99939 * 359.79445 * 16 15 14 18 18 S 1.76199 * 120.00007 * 179.97438 * 17 16 15 19 19 N 1.65604 * 107.21915 * 269.98258 * 18 17 16 20 20 O 1.42107 * 106.39924 * 23.51940 * 18 17 16 21 21 O 1.42098 * 106.40517 * 156.43927 * 18 17 16 22 22 C 1.38213 * 120.00116 * 100.00477 * 13 2 1 23 23 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 25 25 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 26 26 H 0.97000 * 119.99792 * 94.99575 * 4 2 1 27 27 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 28 28 H 1.07996 * 120.00530 * 359.97438 * 14 13 2 29 29 H 1.07997 * 120.00109 * 180.25651 * 15 14 13 30 30 H 1.08002 * 119.99778 * 179.77137 * 16 15 14 31 31 H 0.97001 * 119.99898 * 149.99642 * 19 18 17 32 32 H 0.96994 * 119.99864 * 329.99886 * 19 18 17 33 33 H 1.08003 * 119.99464 * 0.02562 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6062 -0.6633 3.5106 8 7 2.9191 -1.9403 3.4515 9 14 2.7773 0.2668 5.1216 10 1 2.3647 1.6796 4.9237 11 1 1.9116 -0.3627 6.1509 12 1 4.1921 0.2230 5.5706 13 6 2.0324 -0.7105 -1.2304 14 6 2.0720 -2.0921 -1.2631 15 6 2.5282 -2.7439 -2.3933 16 6 2.9543 -2.0139 -3.4876 17 6 2.9200 -0.6327 -3.4527 18 16 3.4636 0.2976 -4.8469 19 7 5.0834 0.5784 -4.6474 20 8 3.3408 -0.5595 -5.9737 21 8 2.8231 1.5630 -4.7595 22 6 2.4588 0.0191 -2.3240 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8898 25 1 -0.3632 0.5139 -0.8901 26 1 2.2489 -1.6318 1.1527 27 1 3.2389 -2.3985 4.2445 28 1 1.7433 -2.6623 -0.4068 29 1 2.5553 -3.8232 -2.4205 30 1 3.3143 -2.5231 -4.3694 31 1 5.6592 0.6679 -5.4229 32 1 5.4563 0.6535 -3.7552 33 1 2.4324 1.0985 -2.2966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336679410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:22 Heat of formation + Delta-G solvation = -69.260765 kcal Electronic energy + Delta-G solvation = -18323.224322 eV Core-core repulsion = 15281.866562 eV Total energy + Delta-G solvation = -3041.357759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56119 -38.22612 -37.17013 -36.90412 -34.27381 -34.01730 -32.27473 -31.50901 -29.75823 -26.11488 -24.71059 -23.79937 -21.90912 -20.31364 -19.50896 -18.73286 -18.31461 -17.68560 -17.02456 -16.62275 -16.47237 -15.80781 -15.78241 -15.02544 -14.85404 -14.59818 -14.11073 -13.65758 -13.34724 -13.22392 -13.17544 -13.16059 -13.09033 -12.91199 -12.78687 -12.55392 -12.11866 -11.95420 -11.69147 -11.59413 -11.27602 -11.04193 -10.35451 -9.83818 -9.05947 -7.96175 -5.24670 -0.57565 -0.17511 0.30301 1.47935 1.48590 1.58222 2.19411 2.44595 2.56156 2.81630 3.38319 3.42459 3.83103 3.87831 3.96695 4.07929 4.24915 4.39726 4.49006 4.69200 4.74953 4.91410 4.96009 5.05793 5.09922 5.29019 5.29268 5.43270 5.49333 5.60328 5.85589 6.26120 6.37001 7.33238 8.04914 8.30306 9.27535 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030238 B = 0.004470 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.762117 B = 6263.146744 C = 6429.324052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.199 3.801 3 H 0.059 0.941 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.077 0.923 7 C -0.072 4.072 8 N -0.969 5.969 9 Si 0.970 3.030 10 H -0.266 1.266 11 H -0.295 1.295 12 H -0.294 1.294 13 C -0.105 4.105 14 C -0.062 4.062 15 C -0.137 4.137 16 C -0.028 4.028 17 C -0.676 4.676 18 S 2.737 3.263 19 N -1.233 6.233 20 O -0.989 6.989 21 O -0.994 6.994 22 C -0.028 4.028 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.376 0.624 27 H 0.251 0.749 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.431 0.569 32 H 0.428 0.572 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 1.861 -16.751 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.091 3.909 3 H 0.077 0.923 4 N -0.375 5.375 5 C -0.370 4.370 6 H 0.095 0.905 7 C -0.264 4.264 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.222 1.222 12 H -0.221 1.221 13 C -0.107 4.107 14 C -0.081 4.081 15 C -0.155 4.155 16 C -0.047 4.047 17 C -0.763 4.763 18 S 2.825 3.175 19 N -0.912 5.912 20 O -0.978 6.978 21 O -0.984 6.984 22 C -0.048 4.048 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.209 0.791 27 H 0.060 0.940 28 H 0.138 0.862 29 H 0.175 0.825 30 H 0.181 0.819 31 H 0.264 0.736 32 H 0.258 0.742 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.476 2.275 -17.370 17.693 hybrid contribution 0.496 -0.460 2.096 2.202 sum 2.972 1.815 -15.274 15.666 Atomic orbital electron populations 1.22299 0.96734 1.01164 1.01075 1.19403 0.93125 0.94926 0.83438 0.92286 1.42684 1.78525 1.10451 1.05809 1.19658 1.35052 0.94319 0.88018 0.90460 1.25491 1.02862 0.96833 1.01250 1.69804 1.52709 1.10145 1.29330 0.85118 0.76732 0.78246 0.79931 1.19063 1.22240 1.22140 1.20397 0.99664 0.94645 0.95958 1.21474 0.94232 0.94388 0.97975 1.21570 0.99536 1.01768 0.92675 1.21197 0.93157 0.91616 0.98718 1.30629 1.19616 1.07499 1.18538 1.00328 0.72699 0.72699 0.71814 1.52746 1.28235 1.91873 1.18380 1.93548 1.86285 1.68230 1.49781 1.93576 1.75477 1.42799 1.86502 1.20919 0.92565 1.00678 0.90642 0.93729 0.93448 0.91472 0.79078 0.94024 0.86245 0.82522 0.81896 0.73631 0.74193 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.47 71.98 0.68 -4.70 16 2 C 0.20 7.70 3.09 44.24 0.14 7.84 16 3 H 0.06 2.27 7.94 -2.39 -0.02 2.25 16 4 N -0.73 -35.59 5.07 -326.49 -1.66 -37.24 16 5 C -0.24 -12.84 9.93 84.04 0.83 -12.00 16 6 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 7 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 8 N -0.97 -57.72 13.06 21.65 0.28 -57.43 16 9 Si 0.97 45.14 29.55 68.60 2.03 47.16 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 C -0.10 -3.50 4.96 -19.87 -0.10 -3.60 16 14 C -0.06 -1.97 9.06 22.27 0.20 -1.77 16 15 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16 16 C -0.03 -0.63 9.52 22.27 0.21 -0.42 16 17 C -0.68 -16.22 5.97 22.27 0.13 -16.09 16 18 S 2.74 56.33 6.28 -56.49 -0.35 55.97 16 19 N -1.23 -15.30 9.52 37.02 0.35 -14.95 16 20 O -0.99 -24.59 17.28 -128.00 -2.21 -26.80 16 21 O -0.99 -27.28 17.28 -128.00 -2.21 -29.49 16 22 C -0.03 -0.80 9.14 22.27 0.20 -0.60 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 26 H 0.38 19.28 6.05 -92.71 -0.56 18.72 16 27 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 28 H 0.12 4.12 6.90 -2.91 -0.02 4.10 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.16 2.82 7.62 -2.91 -0.02 2.80 16 31 H 0.43 3.45 8.96 -96.74 -0.87 2.58 16 32 H 0.43 4.13 8.96 -96.75 -0.87 3.26 16 33 H 0.15 3.81 7.60 -2.91 -0.02 3.79 16 Total: -1.00 -72.55 298.73 -1.91 -74.46 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -1.13 Total: 26.41 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 3.00 Total: -38.08 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -1.02 Total: -109.62 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -4.42 Total: -56.29 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 56.33 SS G_CDS: -0.35 Total: 55.97 kcal Total: -72.55 -1.91 -74.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336679410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.199 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds