Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00096 * 2 1 4 4 C 1.50697 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.30943 * 122.90382 * 269.95902 * 4 3 2 6 6 C 1.29431 * 117.36326 * 180.02562 * 5 4 3 7 7 S 1.70949 * 110.39121 * 359.72942 * 6 5 4 8 8 C 1.35665 * 122.90509 * 90.00234 * 4 3 2 9 9 C 1.46685 * 126.13007 * 359.95956 * 8 4 3 10 10 O 1.21689 * 119.99732 * 0.02562 * 9 8 4 11 11 N 1.34768 * 120.00002 * 180.02562 * 9 8 4 12 12 C 1.46500 * 120.00056 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46845 * 35.00845 * 12 11 9 14 14 C 1.52997 * 109.47473 * 275.00296 * 12 11 9 15 15 C 1.50706 * 109.47187 * 154.99900 * 12 11 9 16 16 H 1.07998 * 119.99629 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46997 * 120.00173 * 19 17 15 22 22 H 1.48501 * 109.47364 * 240.00497 * 19 17 15 23 23 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47441 * 300.00347 * 1 2 3 25 25 H 1.09004 * 109.47147 * 59.99824 * 1 2 3 26 26 H 1.09005 * 109.47046 * 59.99823 * 3 2 1 27 27 H 1.08998 * 109.47215 * 300.00080 * 3 2 1 28 28 H 1.07994 * 124.80328 * 180.02562 * 6 5 4 29 29 H 0.97001 * 120.00396 * 0.02562 * 11 9 8 30 30 H 1.09002 * 109.47153 * 59.99757 * 14 12 11 31 31 H 1.09001 * 109.46832 * 299.99948 * 14 12 11 32 32 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 33 33 H 0.96998 * 120.00365 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2212 1.1313 1.1003 6 6 5.5055 1.0300 0.9759 7 16 5.9423 0.9869 -0.6763 8 6 4.2476 1.1281 -1.1381 9 6 3.7249 1.1685 -2.5080 10 8 2.5269 1.2631 -2.6996 11 7 4.5715 1.1009 -3.5545 12 6 4.0495 1.1419 -4.9227 13 1 3.1830 1.8020 -4.9614 14 6 3.6369 -0.2670 -5.3536 15 6 5.1169 1.6592 -5.8524 16 1 6.0872 1.9299 -5.4629 17 6 4.8551 1.7858 -7.2001 18 7 3.6737 1.4556 -7.6744 19 14 6.1784 2.4263 -8.3525 20 1 7.4089 2.7242 -7.5763 21 1 6.4792 1.3982 -9.3809 22 1 5.6994 3.6653 -9.0164 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 6.2021 0.9752 1.7993 29 1 5.5264 1.0252 -3.4018 30 1 2.8649 -0.6412 -4.6813 31 1 4.5035 -0.9271 -5.3149 32 1 3.2481 -0.2365 -6.3715 33 1 3.4894 1.5450 -8.6225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339894133.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = -35.135069 kcal Electronic energy + Delta-G solvation = -18415.008752 eV Core-core repulsion = 15375.130794 eV Total energy + Delta-G solvation = -3039.877958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20783 -38.54069 -37.33479 -34.89806 -32.50724 -31.28613 -29.34808 -27.57224 -26.01161 -25.29270 -24.46704 -22.26854 -20.05882 -19.32411 -18.44577 -17.10279 -16.38156 -15.84670 -15.49356 -15.31970 -14.98348 -14.72404 -14.62487 -13.95533 -13.62396 -13.16875 -12.87048 -12.47328 -12.17253 -11.78326 -11.44945 -11.22423 -11.10078 -11.00769 -10.80036 -10.35445 -10.28084 -9.90962 -9.61808 -9.47806 -9.12367 -9.09982 -8.96189 -8.61292 -8.03547 -6.16923 -4.26582 0.31431 1.21181 1.59078 2.45747 3.21403 3.29248 3.31854 3.60945 3.85456 3.99323 4.32288 4.42796 4.98905 5.08158 5.15765 5.38664 5.42933 5.53035 5.62979 5.76928 5.80224 6.10553 6.77832 6.91723 7.08711 7.26854 7.32762 7.45302 7.58537 7.64336 7.84497 8.08469 8.50309 8.68498 8.92899 9.40672 10.89156 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.005337 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.647502 B = 5244.912086 C = 6222.669983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.132 3.868 4 C 0.120 3.880 5 N -0.463 5.463 6 C 0.017 3.983 7 S 0.170 5.830 8 C -0.247 4.247 9 C 0.578 3.422 10 O -0.529 6.529 11 N -0.697 5.697 12 C 0.265 3.735 13 H 0.053 0.947 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.084 0.916 24 H 0.037 0.963 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.204 0.796 29 H 0.387 0.613 30 H 0.017 0.983 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -0.961 14.646 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.299 6.299 3 C 0.053 3.947 4 C -0.017 4.017 5 N -0.176 5.176 6 C -0.279 4.279 7 S 0.425 5.575 8 C -0.372 4.372 9 C 0.361 3.639 10 O -0.408 6.408 11 N -0.345 5.345 12 C 0.164 3.836 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.102 0.898 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.221 0.779 29 H 0.220 0.780 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.290 -1.140 14.307 14.533 hybrid contribution 0.261 0.517 -0.417 0.714 sum 2.551 -0.623 13.889 14.135 Atomic orbital electron populations 1.22700 0.80713 1.02588 1.00043 1.87878 1.19794 1.26694 1.95487 1.20998 0.85210 0.86060 1.02429 1.20175 0.97114 0.99110 0.85328 1.65992 1.05017 1.15310 1.31326 1.28576 0.95198 1.03601 1.00543 1.84000 1.06164 1.64435 1.02896 1.26083 0.96104 1.14697 1.00321 1.16736 0.86740 0.78299 0.82141 1.90747 1.14445 1.51063 1.84565 1.46525 1.08952 1.71067 1.07934 1.18854 0.95704 0.94566 0.74522 0.92962 1.22087 0.98170 0.97207 1.03178 1.21223 0.98892 1.44842 0.92402 0.91958 1.24878 0.95778 0.94965 0.97992 1.69905 1.20880 1.46947 1.14229 0.86373 0.81456 0.78575 0.80584 1.19687 1.20818 1.20828 0.89782 0.94413 0.93417 0.92255 0.88658 0.77917 0.78045 0.96419 0.95361 0.88935 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.52 10.69 -35.23 -0.38 -6.90 16 3 C 0.13 2.16 5.74 36.00 0.21 2.37 16 4 C 0.12 2.02 6.42 -83.89 -0.54 1.48 16 5 N -0.46 -6.91 10.50 -11.53 -0.12 -7.03 16 6 C 0.02 0.19 12.22 51.75 0.63 0.82 16 7 S 0.17 2.11 22.35 -107.50 -2.40 -0.29 16 8 C -0.25 -4.26 6.48 -37.09 -0.24 -4.50 16 9 C 0.58 12.08 7.74 -12.85 -0.10 11.98 16 10 O -0.53 -12.50 13.93 5.20 0.07 -12.42 16 11 N -0.70 -14.84 5.06 -56.24 -0.28 -15.12 16 12 C 0.26 6.69 2.56 -69.08 -0.18 6.52 16 13 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 14 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 15 C -0.54 -14.00 8.73 -34.44 -0.30 -14.31 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.49 11.32 55.43 0.63 -23.87 16 19 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.69 6.01 -51.93 -0.31 1.38 16 28 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.39 7.25 7.72 -40.82 -0.32 6.93 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -31.36 300.52 -5.97 -37.33 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.84 Total: 4.16 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.85 Total: 4.31 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.22 Total: -46.02 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.30 Total: -19.32 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.40 Total: -0.29 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.36 -5.97 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339894133.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.192 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds