Wall clock time and date at job start Mon Mar 30 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00096 * 2 1 4 4 C 1.50697 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.30943 * 122.90382 * 269.95902 * 4 3 2 6 6 C 1.29431 * 117.36326 * 180.02562 * 5 4 3 7 7 S 1.70949 * 110.39121 * 359.72942 * 6 5 4 8 8 C 1.35665 * 122.90509 * 90.00234 * 4 3 2 9 9 C 1.46685 * 126.13007 * 359.95956 * 8 4 3 10 10 O 1.21689 * 119.99732 * 0.02562 * 9 8 4 11 11 N 1.34768 * 120.00002 * 180.02562 * 9 8 4 12 12 C 1.46500 * 120.00056 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46845 * 35.00845 * 12 11 9 14 14 C 1.52997 * 109.47473 * 275.00296 * 12 11 9 15 15 C 1.50706 * 109.47187 * 154.99900 * 12 11 9 16 16 H 1.07998 * 119.99629 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46997 * 120.00173 * 19 17 15 22 22 H 1.48501 * 109.47364 * 240.00497 * 19 17 15 23 23 H 1.08998 * 109.47474 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47441 * 300.00347 * 1 2 3 25 25 H 1.09004 * 109.47147 * 59.99824 * 1 2 3 26 26 H 1.09005 * 109.47046 * 59.99823 * 3 2 1 27 27 H 1.08998 * 109.47215 * 300.00080 * 3 2 1 28 28 H 1.07994 * 124.80328 * 180.02562 * 6 5 4 29 29 H 0.97001 * 120.00396 * 0.02562 * 11 9 8 30 30 H 1.09002 * 109.47153 * 59.99757 * 14 12 11 31 31 H 1.09001 * 109.46832 * 299.99948 * 14 12 11 32 32 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 33 33 H 0.96998 * 120.00365 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2212 1.1313 1.1003 6 6 5.5055 1.0300 0.9759 7 16 5.9423 0.9869 -0.6763 8 6 4.2476 1.1281 -1.1381 9 6 3.7249 1.1685 -2.5080 10 8 2.5269 1.2631 -2.6996 11 7 4.5715 1.1009 -3.5545 12 6 4.0495 1.1419 -4.9227 13 1 3.1830 1.8020 -4.9614 14 6 3.6369 -0.2670 -5.3536 15 6 5.1169 1.6592 -5.8524 16 1 6.0872 1.9299 -5.4629 17 6 4.8551 1.7858 -7.2001 18 7 3.6737 1.4556 -7.6744 19 14 6.1784 2.4263 -8.3525 20 1 7.4089 2.7242 -7.5763 21 1 6.4792 1.3982 -9.3809 22 1 5.6994 3.6653 -9.0164 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 6.2021 0.9752 1.7993 29 1 5.5264 1.0252 -3.4018 30 1 2.8649 -0.6412 -4.6813 31 1 4.5035 -0.9271 -5.3149 32 1 3.2481 -0.2365 -6.3715 33 1 3.4894 1.5450 -8.6225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339894133.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:43 Heat of formation + Delta-G solvation = -58.852514 kcal Electronic energy + Delta-G solvation = -18416.037218 eV Core-core repulsion = 15375.130794 eV Total energy + Delta-G solvation = -3040.906424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47623 -40.10372 -38.53921 -36.78313 -34.42020 -32.57232 -31.10300 -28.92071 -27.37419 -27.11279 -25.57221 -23.92185 -21.83362 -20.80059 -19.65392 -18.67670 -17.65408 -17.47268 -17.15241 -16.67205 -16.41096 -16.09925 -15.95870 -15.38124 -15.00737 -14.79411 -14.46135 -13.93590 -13.75267 -13.35251 -13.00014 -12.91177 -12.76855 -12.52570 -12.32088 -12.30134 -12.11679 -11.23152 -11.12727 -10.83699 -10.65791 -10.62677 -10.52013 -10.07795 -9.84111 -8.19008 -6.36885 -0.83572 0.12363 0.53240 1.30726 1.45447 1.46369 1.58525 2.07192 2.24936 2.48898 2.85807 3.11969 3.33888 3.77464 3.94102 4.10674 4.35687 4.47249 4.52637 4.59982 4.71655 4.79968 4.88695 4.94281 5.05038 5.37046 5.52511 5.62478 5.83091 6.04958 6.11558 6.48744 6.67691 6.77540 7.21992 7.38731 8.87781 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.005337 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.647502 B = 5244.912086 C = 6222.669983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.130 3.870 4 C 0.123 3.877 5 N -0.488 5.488 6 C 0.046 3.954 7 S 0.232 5.768 8 C -0.300 4.300 9 C 0.577 3.423 10 O -0.568 6.568 11 N -0.696 5.696 12 C 0.272 3.728 13 H 0.006 0.994 14 C -0.134 4.134 15 C -0.548 4.548 16 H 0.074 0.926 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.974 3.026 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.283 1.283 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.257 0.743 29 H 0.400 0.600 30 H 0.011 0.989 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -0.976 16.358 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.051 3.949 4 C -0.016 4.016 5 N -0.202 5.202 6 C -0.249 4.249 7 S 0.488 5.512 8 C -0.425 4.425 9 C 0.363 3.637 10 O -0.450 6.450 11 N -0.345 5.345 12 C 0.169 3.831 13 H 0.024 0.976 14 C -0.193 4.193 15 C -0.586 4.586 16 H 0.092 0.908 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.799 3.201 20 H -0.182 1.182 21 H -0.204 1.204 22 H -0.209 1.209 23 H 0.118 0.882 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.272 0.728 29 H 0.235 0.765 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.995 -1.160 16.045 16.844 hybrid contribution -0.555 0.508 -0.817 1.110 sum 4.441 -0.652 15.228 15.876 Atomic orbital electron populations 1.22907 0.78938 1.03930 1.00766 1.87825 1.21905 1.27172 1.95623 1.20970 0.85809 0.85926 1.02201 1.20315 0.97417 0.97948 0.85897 1.66077 1.06370 1.17497 1.30291 1.29549 0.94755 0.98933 1.01648 1.83741 1.01676 1.63065 1.02727 1.25660 0.99807 1.18840 0.98147 1.17166 0.86176 0.76879 0.83509 1.90717 1.16199 1.52447 1.85668 1.46223 1.09721 1.71792 1.06720 1.18460 0.94325 0.93595 0.76727 0.97613 1.21909 0.98304 0.97429 1.01644 1.21525 0.99321 1.44907 0.92831 0.90779 1.25792 0.97894 0.95020 0.99685 1.70049 1.22906 1.47847 1.14648 0.85263 0.78920 0.77678 0.78277 1.18246 1.20398 1.20932 0.88183 0.91865 0.94472 0.90174 0.91060 0.72750 0.76466 0.96972 0.94073 0.91074 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -14.11 10.69 -148.98 -1.59 -15.70 16 3 C 0.13 4.32 5.74 71.23 0.41 4.73 16 4 C 0.12 4.07 6.42 42.09 0.27 4.34 16 5 N -0.49 -13.31 10.50 -190.41 -2.00 -15.31 16 6 C 0.05 0.85 12.22 130.60 1.60 2.44 16 7 S 0.23 5.04 22.35 -56.49 -1.26 3.78 16 8 C -0.30 -10.21 6.48 23.88 0.15 -10.05 16 9 C 0.58 24.89 7.74 86.45 0.67 25.56 16 10 O -0.57 -28.51 13.93 -4.31 -0.06 -28.57 16 11 N -0.70 -30.14 5.06 -450.08 -2.28 -32.42 16 12 C 0.27 14.21 2.56 44.25 0.11 14.32 16 13 H 0.01 0.36 7.58 -2.39 -0.02 0.35 16 14 C -0.13 -6.88 9.26 71.98 0.67 -6.22 16 15 C -0.55 -28.80 8.73 25.60 0.22 -28.58 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 17 C 0.02 0.87 5.30 84.65 0.45 1.32 16 18 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 19 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.07 2.69 6.01 -2.39 -0.01 2.68 16 28 H 0.26 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.40 14.78 7.72 -92.71 -0.72 14.07 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 3.96 6.07 -2.38 -0.01 3.94 16 33 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -70.75 300.52 1.30 -69.45 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.42 Total: 17.28 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.80 Total: 9.91 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.04 Total: -99.55 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.65 Total: -44.27 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.26 Total: 3.78 kcal Total: -70.75 1.30 -69.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339894133.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.594 kcal (2) G-P(sol) polarization free energy of solvation -70.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds