Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00360 * 2 1 4 4 C 1.50701 * 109.47433 * 179.97438 * 3 2 1 5 5 N 1.30942 * 122.90168 * 90.02500 * 4 3 2 6 6 C 1.29434 * 117.36033 * 179.97438 * 5 4 3 7 7 S 1.70945 * 110.39171 * 0.02562 * 6 5 4 8 8 C 1.35659 * 122.90445 * 269.98691 * 4 3 2 9 9 C 1.46680 * 126.13290 * 0.05644 * 8 4 3 10 10 O 1.21691 * 119.99768 * 359.95135 * 9 8 4 11 11 N 1.34776 * 120.00439 * 179.97438 * 9 8 4 12 12 C 1.46494 * 120.00353 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47250 * 324.99955 * 12 11 9 14 14 C 1.52993 * 109.47221 * 85.00188 * 12 11 9 15 15 C 1.50699 * 109.47245 * 205.00375 * 12 11 9 16 16 H 1.07999 * 120.00404 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00223 * 180.02562 * 15 12 11 18 18 N 1.31521 * 119.99736 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00503 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46892 * 59.99553 * 19 17 15 21 21 H 1.48494 * 109.47544 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46795 * 300.00259 * 19 17 15 23 23 H 1.08999 * 109.47407 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47270 * 300.00542 * 1 2 3 25 25 H 1.09003 * 109.46972 * 59.99723 * 1 2 3 26 26 H 1.09004 * 109.47045 * 59.99924 * 3 2 1 27 27 H 1.09001 * 109.47091 * 299.99752 * 3 2 1 28 28 H 1.07996 * 124.80078 * 180.02562 * 6 5 4 29 29 H 0.96998 * 119.99883 * 0.02562 * 11 9 8 30 30 H 1.09004 * 109.47418 * 180.02562 * 14 12 11 31 31 H 1.09004 * 109.47333 * 300.00036 * 14 12 11 32 32 H 1.09002 * 109.47388 * 60.00253 * 14 12 11 33 33 H 0.97000 * 119.99632 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2221 1.1305 -1.0985 6 6 5.5064 1.0293 -0.9729 7 16 5.9424 0.9941 0.6796 8 6 4.2468 1.1287 1.1399 9 6 3.7230 1.1695 2.5094 10 8 2.5249 1.2643 2.7000 11 7 4.5687 1.1025 3.5567 12 6 4.0456 1.1439 4.9244 13 1 3.1789 1.8038 4.9622 14 6 3.6332 -0.2649 5.3555 15 6 5.1121 1.6619 5.8547 16 1 6.0827 1.9328 5.4660 17 6 4.8492 1.7890 7.2022 18 7 3.6675 1.4586 7.6756 19 14 6.1714 2.4303 8.3554 20 1 6.5719 3.7979 7.9374 21 1 5.6411 2.4724 9.7418 22 1 7.3521 1.5312 8.3035 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 6.2037 0.9747 -1.7958 29 1 5.5238 1.0277 3.4048 30 1 3.2436 -0.2341 6.3731 31 1 2.8618 -0.6396 4.6827 32 1 4.4999 -0.9248 5.3179 33 1 3.4824 1.5484 8.6235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339894134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -35.052839 kcal Electronic energy + Delta-G solvation = -18414.846811 eV Core-core repulsion = 15374.972419 eV Total energy + Delta-G solvation = -3039.874392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20801 -38.53978 -37.33429 -34.89662 -32.50423 -31.28593 -29.34628 -27.57173 -26.01104 -25.28823 -24.46703 -22.26749 -20.05698 -19.32390 -18.44585 -17.10122 -16.38107 -15.84130 -15.49232 -15.31850 -14.98142 -14.72427 -14.62460 -13.96081 -13.62418 -13.17009 -12.87045 -12.46435 -12.17198 -11.77260 -11.44971 -11.22791 -11.09787 -10.99852 -10.79907 -10.38029 -10.26994 -9.90938 -9.61723 -9.47812 -9.12311 -9.11338 -8.96285 -8.60349 -8.03443 -6.16364 -4.26250 0.31440 1.21161 1.59082 2.45713 3.23610 3.28978 3.29945 3.60950 3.85449 3.99377 4.32535 4.42846 4.98925 5.08123 5.16038 5.38679 5.42961 5.53143 5.63044 5.76933 5.80227 6.10601 6.78034 6.91860 7.08818 7.26923 7.32885 7.45378 7.58437 7.64336 7.84617 8.08756 8.50389 8.68381 8.92874 9.40844 10.89590 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.005338 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.884896 B = 5244.305328 C = 6222.732152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.132 3.868 4 C 0.120 3.880 5 N -0.463 5.463 6 C 0.017 3.983 7 S 0.170 5.830 8 C -0.247 4.247 9 C 0.578 3.422 10 O -0.529 6.529 11 N -0.697 5.697 12 C 0.265 3.735 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.084 0.916 24 H 0.047 0.953 25 H 0.037 0.963 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.204 0.796 29 H 0.387 0.613 30 H 0.092 0.908 31 H 0.017 0.983 32 H 0.027 0.973 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 -0.958 -14.614 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.299 6.299 3 C 0.053 3.947 4 C -0.017 4.017 5 N -0.176 5.176 6 C -0.279 4.279 7 S 0.425 5.575 8 C -0.372 4.372 9 C 0.361 3.639 10 O -0.408 6.408 11 N -0.345 5.345 12 C 0.164 3.836 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.221 0.779 29 H 0.219 0.781 30 H 0.111 0.889 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.284 -1.130 -14.268 14.493 hybrid contribution 0.280 0.516 0.402 0.712 sum 2.564 -0.614 -13.866 14.114 Atomic orbital electron populations 1.22700 0.80714 1.02586 1.00043 1.87878 1.19794 1.26695 1.95487 1.21002 0.85208 0.86063 1.02432 1.20176 0.97116 0.99103 0.85330 1.65994 1.05000 1.15298 1.31353 1.28577 0.95209 1.03604 1.00532 1.83997 1.06095 1.64496 1.02907 1.26079 0.96091 1.14714 1.00318 1.16738 0.86744 0.78297 0.82140 1.90747 1.14429 1.51058 1.84583 1.46525 1.08948 1.71076 1.07929 1.18839 0.95667 0.94552 0.74512 0.92971 1.22088 0.98171 0.97213 1.03171 1.21146 0.98870 1.45057 0.92435 0.92070 1.24877 0.95778 0.94948 0.97967 1.69892 1.20862 1.46789 1.14418 0.86481 0.81453 0.79419 0.79601 1.20137 1.21077 1.20096 0.89782 0.93409 0.94423 0.88659 0.92247 0.77917 0.78052 0.88936 0.96425 0.95364 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.52 10.69 -35.23 -0.38 -6.90 16 3 C 0.13 2.16 5.75 36.01 0.21 2.37 16 4 C 0.12 2.02 6.42 -83.89 -0.54 1.49 16 5 N -0.46 -6.91 10.50 -11.53 -0.12 -7.03 16 6 C 0.02 0.19 12.22 51.75 0.63 0.82 16 7 S 0.17 2.11 22.35 -107.50 -2.40 -0.29 16 8 C -0.25 -4.26 6.48 -37.10 -0.24 -4.50 16 9 C 0.58 12.09 7.74 -12.85 -0.10 11.99 16 10 O -0.53 -12.50 13.93 5.20 0.07 -12.43 16 11 N -0.70 -14.84 5.06 -56.25 -0.28 -15.13 16 12 C 0.27 6.71 2.56 -69.09 -0.18 6.54 16 13 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 14 C -0.15 -3.67 9.26 37.15 0.34 -3.33 16 15 C -0.54 -14.05 8.73 -34.44 -0.30 -14.35 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 18 N -0.88 -24.50 11.32 55.43 0.63 -23.87 16 19 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 1.69 6.01 -51.93 -0.31 1.38 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.39 7.24 7.72 -40.82 -0.32 6.93 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -31.32 300.51 -5.97 -37.29 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.84 Total: 4.22 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.85 Total: 4.30 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.22 Total: -46.03 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.30 Total: -19.33 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.40 Total: -0.29 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.32 -5.97 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339894134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.234 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds