Wall clock time and date at job start Mon Mar 30 2020 01:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00360 * 2 1 4 4 C 1.50701 * 109.47433 * 179.97438 * 3 2 1 5 5 N 1.30942 * 122.90168 * 90.02500 * 4 3 2 6 6 C 1.29434 * 117.36033 * 179.97438 * 5 4 3 7 7 S 1.70945 * 110.39171 * 0.02562 * 6 5 4 8 8 C 1.35659 * 122.90445 * 269.98691 * 4 3 2 9 9 C 1.46680 * 126.13290 * 0.05644 * 8 4 3 10 10 O 1.21691 * 119.99768 * 359.95135 * 9 8 4 11 11 N 1.34776 * 120.00439 * 179.97438 * 9 8 4 12 12 C 1.46494 * 120.00353 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47250 * 324.99955 * 12 11 9 14 14 C 1.52993 * 109.47221 * 85.00188 * 12 11 9 15 15 C 1.50699 * 109.47245 * 205.00375 * 12 11 9 16 16 H 1.07999 * 120.00404 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00223 * 180.02562 * 15 12 11 18 18 N 1.31521 * 119.99736 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00503 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46892 * 59.99553 * 19 17 15 21 21 H 1.48494 * 109.47544 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46795 * 300.00259 * 19 17 15 23 23 H 1.08999 * 109.47407 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47270 * 300.00542 * 1 2 3 25 25 H 1.09003 * 109.46972 * 59.99723 * 1 2 3 26 26 H 1.09004 * 109.47045 * 59.99924 * 3 2 1 27 27 H 1.09001 * 109.47091 * 299.99752 * 3 2 1 28 28 H 1.07996 * 124.80078 * 180.02562 * 6 5 4 29 29 H 0.96998 * 119.99883 * 0.02562 * 11 9 8 30 30 H 1.09004 * 109.47418 * 180.02562 * 14 12 11 31 31 H 1.09004 * 109.47333 * 300.00036 * 14 12 11 32 32 H 1.09002 * 109.47388 * 60.00253 * 14 12 11 33 33 H 0.97000 * 119.99632 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2221 1.1305 -1.0985 6 6 5.5064 1.0293 -0.9729 7 16 5.9424 0.9941 0.6796 8 6 4.2468 1.1287 1.1399 9 6 3.7230 1.1695 2.5094 10 8 2.5249 1.2643 2.7000 11 7 4.5687 1.1025 3.5567 12 6 4.0456 1.1439 4.9244 13 1 3.1789 1.8038 4.9622 14 6 3.6332 -0.2649 5.3555 15 6 5.1121 1.6619 5.8547 16 1 6.0827 1.9328 5.4660 17 6 4.8492 1.7890 7.2022 18 7 3.6675 1.4586 7.6756 19 14 6.1714 2.4303 8.3554 20 1 6.5719 3.7979 7.9374 21 1 5.6411 2.4724 9.7418 22 1 7.3521 1.5312 8.3035 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 6.2037 0.9747 -1.7958 29 1 5.5238 1.0277 3.4048 30 1 3.2436 -0.2341 6.3731 31 1 2.8618 -0.6396 4.6827 32 1 4.4999 -0.9248 5.3179 33 1 3.4824 1.5484 8.6235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339894134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:46 Heat of formation + Delta-G solvation = -58.739002 kcal Electronic energy + Delta-G solvation = -18415.873920 eV Core-core repulsion = 15374.972419 eV Total energy + Delta-G solvation = -3040.901501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47663 -40.10329 -38.53925 -36.78179 -34.41731 -32.57239 -31.10163 -28.92083 -27.36951 -27.11217 -25.57258 -23.92073 -21.83251 -20.80061 -19.65415 -18.67331 -17.65163 -17.46770 -17.15214 -16.67153 -16.41248 -16.09909 -15.96074 -15.38559 -15.00785 -14.79200 -14.45424 -13.93622 -13.74036 -13.35380 -13.00359 -12.89939 -12.75510 -12.52668 -12.32640 -12.28493 -12.14871 -11.23031 -11.15068 -10.83681 -10.65346 -10.61310 -10.51836 -10.07851 -9.84106 -8.18435 -6.36576 -0.83589 0.12335 0.53223 1.30664 1.46333 1.48400 1.56288 2.07142 2.24964 2.49251 2.85860 3.12248 3.33869 3.77423 3.94111 4.10616 4.35656 4.47229 4.52635 4.60009 4.71724 4.79925 4.88741 4.94285 5.05139 5.37068 5.52329 5.62546 5.83218 6.05073 6.11566 6.48724 6.67416 6.77599 7.22020 7.38893 8.87866 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.005338 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.884896 B = 5244.305328 C = 6222.732152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.129 3.871 4 C 0.123 3.877 5 N -0.488 5.488 6 C 0.046 3.954 7 S 0.232 5.768 8 C -0.300 4.300 9 C 0.577 3.423 10 O -0.568 6.568 11 N -0.696 5.696 12 C 0.272 3.728 13 H 0.006 0.994 14 C -0.134 4.134 15 C -0.550 4.550 16 H 0.074 0.926 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.100 0.900 24 H 0.037 0.963 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.257 0.743 29 H 0.400 0.600 30 H 0.071 0.929 31 H 0.011 0.989 32 H 0.040 0.960 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -0.978 -16.312 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.051 3.949 4 C -0.016 4.016 5 N -0.202 5.202 6 C -0.249 4.249 7 S 0.488 5.512 8 C -0.425 4.425 9 C 0.363 3.637 10 O -0.450 6.450 11 N -0.345 5.345 12 C 0.170 3.830 13 H 0.024 0.976 14 C -0.193 4.193 15 C -0.588 4.588 16 H 0.092 0.908 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.212 1.212 22 H -0.188 1.188 23 H 0.118 0.882 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.273 0.727 29 H 0.235 0.765 30 H 0.089 0.911 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.000 -1.156 -15.992 16.796 hybrid contribution -0.537 0.510 0.794 1.086 sum 4.463 -0.645 -15.198 15.853 Atomic orbital electron populations 1.22906 0.78939 1.03930 1.00765 1.87825 1.21904 1.27173 1.95623 1.20974 0.85809 0.85928 1.02203 1.20315 0.97419 0.97941 0.85899 1.66080 1.06353 1.17486 1.30319 1.29550 0.94768 0.98936 1.01639 1.83737 1.01594 1.63121 1.02733 1.25657 0.99801 1.18860 0.98144 1.17169 0.86182 0.76878 0.83508 1.90717 1.16186 1.52444 1.85686 1.46223 1.09718 1.71800 1.06715 1.18446 0.94292 0.93581 0.76721 0.97633 1.21910 0.98296 0.97430 1.01646 1.21466 0.99354 1.45119 0.92874 0.90790 1.25794 0.97895 0.94992 0.99666 1.70044 1.22891 1.47718 1.14745 0.85366 0.78751 0.79012 0.77034 1.19518 1.21156 1.18773 0.88180 0.94467 0.91875 0.91065 0.90165 0.72749 0.76467 0.91061 0.96979 0.94094 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -14.12 10.69 -148.98 -1.59 -15.71 16 3 C 0.13 4.32 5.75 71.24 0.41 4.73 16 4 C 0.12 4.08 6.42 42.09 0.27 4.35 16 5 N -0.49 -13.32 10.50 -190.41 -2.00 -15.32 16 6 C 0.05 0.85 12.22 130.60 1.60 2.44 16 7 S 0.23 5.05 22.35 -56.49 -1.26 3.79 16 8 C -0.30 -10.21 6.48 23.88 0.15 -10.06 16 9 C 0.58 24.90 7.74 86.45 0.67 25.57 16 10 O -0.57 -28.52 13.93 -4.32 -0.06 -28.58 16 11 N -0.70 -30.15 5.06 -450.10 -2.28 -32.43 16 12 C 0.27 14.25 2.56 44.24 0.11 14.37 16 13 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 14 C -0.13 -6.88 9.26 71.98 0.67 -6.22 16 15 C -0.55 -28.94 8.73 25.60 0.22 -28.71 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 17 C 0.02 0.90 5.30 84.65 0.45 1.35 16 18 N -0.92 -52.05 11.32 21.45 0.24 -51.81 16 19 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 2.69 6.01 -2.38 -0.01 2.68 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.26 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.40 14.78 7.72 -92.71 -0.72 14.06 16 30 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 31 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -70.70 300.51 1.30 -69.40 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.42 Total: 17.47 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 5.80 Total: 9.85 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.04 Total: -99.56 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.65 Total: -44.29 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.26 Total: 3.79 kcal Total: -70.70 1.30 -69.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339894134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.658 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds