Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47145 * 29.99590 * 4 3 2 6 6 C 1.52996 * 109.47031 * 269.99750 * 4 3 2 7 7 C 1.50701 * 109.46888 * 149.99727 * 4 3 2 8 8 N 1.29375 * 124.70264 * 44.70100 * 7 4 3 9 9 C 1.30944 * 117.46981 * 179.76159 * 8 7 4 10 10 C 1.36784 * 113.91660 * 0.51363 * 9 8 7 11 11 C 1.46559 * 126.17845 * 179.72496 * 10 9 8 12 12 O 1.21735 * 119.99749 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00059 * 0.02562 * 11 10 9 14 14 C 1.36895 * 120.00325 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99626 * 359.97438 * 14 13 11 16 16 C 1.39002 * 120.00580 * 179.97438 * 14 13 11 17 17 N 1.31401 * 119.99747 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00534 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46938 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47184 * 119.99909 * 18 16 14 21 21 H 1.48497 * 109.47108 * 240.00164 * 18 16 14 22 22 S 1.70925 * 124.70178 * 224.99385 * 7 4 3 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.09001 * 109.47120 * 180.02562 * 6 4 3 29 29 H 1.09003 * 109.47460 * 300.00074 * 6 4 3 30 30 H 1.08997 * 109.47597 * 59.99980 * 6 4 3 31 31 H 1.07994 * 123.04551 * 180.21031 * 9 8 7 32 32 H 0.97003 * 120.00085 * 359.97438 * 13 11 10 33 33 H 0.96998 * 120.00086 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5129 6 6 3.9385 1.5008 1.4433 7 6 3.8346 2.7264 -0.7099 8 7 3.2744 3.8795 -0.5357 9 6 3.7430 4.8891 -1.2254 10 6 4.7771 4.5596 -2.0579 11 6 5.4939 5.4742 -2.9510 12 8 6.4016 5.0581 -3.6474 13 7 5.1483 6.7759 -3.0012 14 6 5.8182 7.6303 -3.8350 15 1 6.6240 7.2614 -4.4522 16 6 5.4613 8.9727 -3.8873 17 7 4.4806 9.4215 -3.1367 18 14 6.3759 10.1388 -5.0244 19 1 7.4296 9.3912 -5.7567 20 1 5.4225 10.7316 -5.9965 21 1 7.0032 11.2207 -4.2237 22 16 5.0915 2.8367 -1.8629 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 5.0251 1.5874 1.4437 29 1 3.5058 2.3594 1.9568 30 1 3.6464 0.5850 1.9572 31 1 3.3457 5.8903 -1.1478 32 1 4.4248 7.1073 -2.4466 33 1 4.2313 10.3582 -3.1734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339922044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = -47.136690 kcal Electronic energy + Delta-G solvation = -17718.306905 eV Core-core repulsion = 14677.908517 eV Total energy + Delta-G solvation = -3040.398387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54520 -38.39185 -37.64814 -34.19629 -33.01227 -31.57407 -30.44045 -29.23514 -26.05813 -24.81362 -23.08782 -22.60681 -20.97116 -18.91430 -18.48058 -17.37983 -16.84676 -16.01859 -15.78565 -15.00356 -14.86789 -14.30993 -14.00849 -13.81878 -13.52978 -13.17466 -13.07221 -12.82301 -12.56018 -12.14037 -11.91717 -11.75524 -11.52511 -11.26919 -11.13618 -10.99692 -10.51550 -10.42932 -9.87561 -9.79806 -9.37914 -8.93992 -8.61069 -8.47320 -8.23432 -6.73323 -4.01169 0.71014 1.58175 2.14333 2.94609 3.12225 3.14663 3.22040 3.68748 3.98233 4.10580 4.28909 4.69699 4.84512 4.90995 5.04167 5.10513 5.11426 5.17553 5.33212 5.40528 5.61517 5.69371 5.71115 5.74814 5.96484 6.09463 6.13218 6.52993 7.08737 7.26734 7.77283 8.11821 8.31797 8.88175 9.22144 9.80052 10.42342 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038724 B = 0.003804 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.890766 B = 7359.136665 C = 7671.872825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.176 3.824 5 H 0.076 0.924 6 C -0.166 4.166 7 C -0.009 4.009 8 N -0.439 5.439 9 C 0.036 3.964 10 C -0.223 4.223 11 C 0.488 3.512 12 O -0.599 6.599 13 N -0.524 5.524 14 C -0.285 4.285 15 H 0.113 0.887 16 C 0.024 3.976 17 N -0.876 5.876 18 Si 0.939 3.061 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.277 1.277 22 S 0.195 5.805 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.179 0.821 32 H 0.396 0.604 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -14.680 7.392 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.115 3.885 5 H 0.094 0.906 6 C -0.225 4.225 7 C -0.285 4.285 8 N -0.153 5.153 9 C -0.121 4.121 10 C -0.348 4.348 11 C 0.275 3.725 12 O -0.487 6.487 13 N -0.157 5.157 14 C -0.416 4.416 15 H 0.131 0.869 16 C -0.181 4.181 17 N -0.515 5.515 18 Si 0.765 3.235 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.203 1.203 22 S 0.451 5.549 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.196 0.804 32 H 0.231 0.769 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.004 -15.301 6.890 17.251 hybrid contribution -0.348 1.624 -0.087 1.663 sum -4.351 -13.676 6.803 15.882 Atomic orbital electron populations 1.21723 0.93635 1.01997 1.03392 1.22561 0.95845 0.84047 0.99934 1.88113 1.19323 1.25807 1.94910 1.20269 0.82463 0.90922 0.94879 0.90635 1.22246 1.01697 1.03238 0.95303 1.26817 1.00865 0.97560 1.03259 1.65811 1.27688 0.98121 1.23663 1.22392 0.95347 0.99164 0.95238 1.26456 1.04075 0.97962 1.06311 1.16270 0.87213 0.82301 0.86709 1.90677 1.33707 1.76508 1.47793 1.41819 1.31312 1.06047 1.36547 1.20017 1.14830 0.88776 1.17973 0.86900 1.25498 0.96722 0.97898 0.98012 1.69618 1.26954 1.17107 1.37781 0.85640 0.79264 0.79317 0.79299 1.18759 1.20280 1.20291 1.83655 1.32191 1.04080 1.34953 0.91746 0.91236 0.91765 0.93364 0.93343 0.91248 0.90758 0.91760 0.80416 0.76936 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.98 9.95 -35.23 -0.35 -5.33 16 4 C 0.18 2.26 3.22 -27.88 -0.09 2.17 16 5 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 6 C -0.17 -1.80 9.51 37.16 0.35 -1.45 16 7 C -0.01 -0.15 6.27 -13.31 -0.08 -0.24 16 8 N -0.44 -8.19 10.47 -11.25 -0.12 -8.31 16 9 C 0.04 0.69 10.99 -18.46 -0.20 0.49 16 10 C -0.22 -4.68 6.52 -36.75 -0.24 -4.92 16 11 C 0.49 12.23 7.73 -12.91 -0.10 12.13 16 12 O -0.60 -16.81 16.54 5.16 0.09 -16.72 16 13 N -0.52 -13.37 5.26 -12.20 -0.06 -13.44 16 14 C -0.28 -7.69 9.68 -15.01 -0.15 -7.83 16 15 H 0.11 3.17 7.15 -52.48 -0.38 2.79 16 16 C 0.02 0.61 5.50 -17.45 -0.10 0.52 16 17 N -0.88 -22.64 13.05 55.50 0.72 -21.91 16 18 Si 0.94 19.88 29.55 -169.99 -5.02 14.85 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 S 0.20 3.37 23.00 -107.50 -2.47 0.89 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 31 H 0.18 3.23 7.18 -52.49 -0.38 2.85 16 32 H 0.40 9.58 6.62 -40.82 -0.27 9.31 16 33 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -31.10 306.90 -6.49 -37.58 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.91 Total: 7.04 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 0.02 Total: 0.72 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.54 Total: -43.66 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.27 Total: -22.05 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.47 Total: 0.89 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.10 -6.49 -37.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.553 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds