Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47145 * 29.99590 * 4 3 2 6 6 C 1.52996 * 109.47031 * 269.99750 * 4 3 2 7 7 C 1.50701 * 109.46888 * 149.99727 * 4 3 2 8 8 N 1.29375 * 124.70264 * 44.70100 * 7 4 3 9 9 C 1.30944 * 117.46981 * 179.76159 * 8 7 4 10 10 C 1.36784 * 113.91660 * 0.51363 * 9 8 7 11 11 C 1.46559 * 126.17845 * 179.72496 * 10 9 8 12 12 O 1.21735 * 119.99749 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00059 * 0.02562 * 11 10 9 14 14 C 1.36895 * 120.00325 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99626 * 359.97438 * 14 13 11 16 16 C 1.39002 * 120.00580 * 179.97438 * 14 13 11 17 17 N 1.31401 * 119.99747 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00534 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46938 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47184 * 119.99909 * 18 16 14 21 21 H 1.48497 * 109.47108 * 240.00164 * 18 16 14 22 22 S 1.70925 * 124.70178 * 224.99385 * 7 4 3 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.09001 * 109.47120 * 180.02562 * 6 4 3 29 29 H 1.09003 * 109.47460 * 300.00074 * 6 4 3 30 30 H 1.08997 * 109.47597 * 59.99980 * 6 4 3 31 31 H 1.07994 * 123.04551 * 180.21031 * 9 8 7 32 32 H 0.97003 * 120.00085 * 359.97438 * 13 11 10 33 33 H 0.96998 * 120.00086 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5129 6 6 3.9385 1.5008 1.4433 7 6 3.8346 2.7264 -0.7099 8 7 3.2744 3.8795 -0.5357 9 6 3.7430 4.8891 -1.2254 10 6 4.7771 4.5596 -2.0579 11 6 5.4939 5.4742 -2.9510 12 8 6.4016 5.0581 -3.6474 13 7 5.1483 6.7759 -3.0012 14 6 5.8182 7.6303 -3.8350 15 1 6.6240 7.2614 -4.4522 16 6 5.4613 8.9727 -3.8873 17 7 4.4806 9.4215 -3.1367 18 14 6.3759 10.1388 -5.0244 19 1 7.4296 9.3912 -5.7567 20 1 5.4225 10.7316 -5.9965 21 1 7.0032 11.2207 -4.2237 22 16 5.0915 2.8367 -1.8629 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 5.0251 1.5874 1.4437 29 1 3.5058 2.3594 1.9568 30 1 3.6464 0.5850 1.9572 31 1 3.3457 5.8903 -1.1478 32 1 4.4248 7.1073 -2.4466 33 1 4.2313 10.3582 -3.1734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339922044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = -69.350864 kcal Electronic energy + Delta-G solvation = -17719.270183 eV Core-core repulsion = 14677.908517 eV Total energy + Delta-G solvation = -3041.361666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04898 -39.96567 -38.98899 -36.17730 -34.07422 -33.43074 -31.42200 -30.60745 -27.54147 -26.57020 -24.08621 -23.65498 -22.56834 -20.53892 -20.29532 -18.86697 -18.29868 -17.26154 -16.76870 -16.63830 -16.29998 -15.92460 -15.76770 -15.24175 -15.02220 -14.69511 -14.15706 -14.07101 -13.63689 -13.38472 -12.99797 -12.90126 -12.77247 -12.69160 -12.45666 -12.29489 -12.11628 -11.87511 -11.68035 -11.17512 -10.65852 -10.48558 -10.38276 -10.21568 -9.92795 -8.63651 -6.07200 -0.78376 0.12052 0.65210 1.31839 1.41344 1.54200 1.56542 2.23438 2.24574 2.75120 3.01502 3.10307 3.14369 3.73280 4.03966 4.07331 4.11315 4.25158 4.34566 4.37735 4.53438 4.64900 4.82116 4.90931 5.03463 5.06411 5.25919 5.28074 5.30925 5.79754 6.21554 6.36651 6.64695 6.91565 7.28348 7.84928 8.53143 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038724 B = 0.003804 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.890766 B = 7359.136665 C = 7671.872825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.392 6.392 4 C 0.168 3.832 5 H 0.109 0.891 6 C -0.162 4.162 7 C 0.020 3.980 8 N -0.466 5.466 9 C 0.064 3.936 10 C -0.277 4.277 11 C 0.493 3.507 12 O -0.635 6.635 13 N -0.535 5.535 14 C -0.332 4.332 15 H 0.090 0.910 16 C -0.007 4.007 17 N -0.903 5.903 18 Si 1.004 2.996 19 H -0.269 1.269 20 H -0.267 1.267 21 H -0.266 1.266 22 S 0.243 5.757 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.183 0.817 32 H 0.399 0.601 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -16.767 8.487 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.311 6.311 4 C 0.107 3.893 5 H 0.127 0.873 6 C -0.221 4.221 7 C -0.255 4.255 8 N -0.181 5.181 9 C -0.094 4.094 10 C -0.402 4.402 11 C 0.281 3.719 12 O -0.526 6.526 13 N -0.168 5.168 14 C -0.462 4.462 15 H 0.108 0.892 16 C -0.210 4.210 17 N -0.542 5.542 18 Si 0.826 3.174 19 H -0.193 1.193 20 H -0.192 1.192 21 H -0.191 1.191 22 S 0.500 5.500 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.200 0.800 32 H 0.234 0.766 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.524 -17.395 7.995 19.672 hybrid contribution -0.319 1.914 -0.246 1.956 sum -4.842 -15.481 7.750 17.977 Atomic orbital electron populations 1.21764 0.93269 1.03388 1.02332 1.22851 0.96215 0.82411 1.01665 1.88080 1.19388 1.28547 1.95129 1.20649 0.82950 0.89719 0.96028 0.87342 1.22244 1.02117 1.03992 0.93746 1.27832 0.98620 0.98345 1.00742 1.65971 1.28743 0.98692 1.24652 1.22559 0.93694 0.99783 0.93403 1.26120 1.06004 0.99991 1.08067 1.16752 0.86452 0.82505 0.86183 1.90623 1.35305 1.77326 1.49322 1.41762 1.31731 1.06278 1.37033 1.19923 1.16168 0.90101 1.20051 0.89193 1.26285 0.97168 0.98531 0.98966 1.69667 1.27884 1.17772 1.38843 0.84716 0.78032 0.77148 0.77525 1.19317 1.19167 1.19136 1.83445 1.31650 1.00825 1.34030 0.93248 0.88634 0.92394 0.92110 0.91004 0.90284 0.92721 0.88717 0.79979 0.76610 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.04 0.70 6.47 71.98 0.47 1.16 16 3 O -0.39 -9.58 9.95 -148.98 -1.48 -11.06 16 4 C 0.17 3.70 3.22 29.85 0.10 3.80 16 5 H 0.11 1.71 7.78 -2.39 -0.02 1.69 16 6 C -0.16 -2.92 9.51 71.98 0.68 -2.24 16 7 C 0.02 0.62 6.27 88.47 0.55 1.17 16 8 N -0.47 -16.76 10.47 -189.50 -1.98 -18.74 16 9 C 0.06 2.47 10.99 84.48 0.93 3.40 16 10 C -0.28 -11.71 6.52 24.10 0.16 -11.55 16 11 C 0.49 25.58 7.73 86.41 0.67 26.25 16 12 O -0.64 -36.95 16.54 -4.46 -0.07 -37.03 16 13 N -0.53 -28.50 5.26 -310.72 -1.64 -30.14 16 14 C -0.33 -18.78 9.68 84.09 0.81 -17.97 16 15 H 0.09 5.36 7.15 -2.91 -0.02 5.34 16 16 C -0.01 -0.36 5.50 84.94 0.47 0.10 16 17 N -0.90 -47.55 13.05 21.67 0.28 -47.27 16 18 Si 1.00 41.40 29.55 68.60 2.03 43.43 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 20 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 S 0.24 7.96 23.00 -56.49 -1.30 6.66 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 27 H 0.07 0.80 7.87 -2.39 -0.02 0.78 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.16 7.87 -2.39 -0.02 1.15 16 31 H 0.18 6.71 7.18 -2.91 -0.02 6.68 16 32 H 0.40 20.16 6.62 -92.71 -0.61 19.55 16 33 H 0.29 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -69.29 306.90 1.93 -67.36 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.52 Total: 24.11 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 5.58 Total: 2.68 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -3.34 Total: -96.15 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.56 Total: -48.09 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 7.96 SS G_CDS: -1.30 Total: 6.66 kcal Total: -69.29 1.93 -67.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.991 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds