Wall clock time and date at job start Mon Mar 30 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47284 * 2 1 4 4 C 1.42912 * 113.99745 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46931 * 330.00104 * 4 3 2 6 6 C 1.52998 * 109.46857 * 90.00192 * 4 3 2 7 7 C 1.50701 * 109.46552 * 209.99998 * 4 3 2 8 8 N 1.29374 * 124.70794 * 315.02230 * 7 4 3 9 9 C 1.30939 * 117.47143 * 179.73991 * 8 7 4 10 10 C 1.36781 * 113.92078 * 0.02562 * 9 8 7 11 11 C 1.46561 * 126.18070 * 179.97438 * 10 9 8 12 12 O 1.21728 * 119.99768 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99975 * 0.02562 * 11 10 9 14 14 C 1.36895 * 119.99911 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99682 * 0.02562 * 14 13 11 16 16 C 1.39002 * 119.99756 * 179.97438 * 14 13 11 17 17 N 1.31394 * 120.00206 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99898 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47170 * 89.99945 * 18 16 14 20 20 H 1.48503 * 109.46933 * 209.99843 * 18 16 14 21 21 H 1.48500 * 109.46983 * 329.99777 * 18 16 14 22 22 S 1.70923 * 124.69729 * 134.72738 * 7 4 3 23 23 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46991 * 299.99955 * 1 2 3 25 25 H 1.09003 * 109.47348 * 59.99539 * 1 2 3 26 26 H 1.09002 * 109.46762 * 239.99746 * 2 1 3 27 27 H 1.09003 * 109.47348 * 120.00461 * 2 1 3 28 28 H 1.08999 * 109.46653 * 179.97438 * 6 4 3 29 29 H 1.08997 * 109.47390 * 299.99574 * 6 4 3 30 30 H 1.09001 * 109.47421 * 60.00213 * 6 4 3 31 31 H 1.07995 * 123.04502 * 179.97438 * 9 8 7 32 32 H 0.96992 * 119.99817 * 359.97438 * 13 11 10 33 33 H 0.97001 * 120.00162 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8636 0.6013 0.5129 6 6 3.9387 1.5004 -1.4433 7 6 3.8348 2.7261 0.7099 8 7 3.2781 3.8803 0.5319 9 6 3.7397 4.8876 1.2295 10 6 4.7712 4.5573 2.0649 11 6 5.4845 5.4707 2.9620 12 8 6.3907 5.0542 3.6599 13 7 5.1372 6.7719 3.0142 14 6 5.8038 7.6252 3.8518 15 1 6.6083 7.2558 4.4704 16 6 5.4459 8.9673 3.9052 17 7 4.4681 9.4171 3.1515 18 14 6.3560 10.1319 5.0476 19 1 7.5129 10.7253 4.3303 20 1 5.4376 11.2135 5.4860 21 1 6.8407 9.3827 6.2346 22 16 5.0873 2.8349 1.8679 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.0253 1.5869 -1.4437 29 1 3.6466 0.5847 -1.9572 30 1 3.5061 2.3591 -1.9568 31 1 3.3426 5.8889 1.1519 32 1 4.4154 7.1039 2.4579 33 1 4.2185 10.3537 3.1885 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339922046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:13 Heat of formation + Delta-G solvation = -47.092130 kcal Electronic energy + Delta-G solvation = -17718.461635 eV Core-core repulsion = 14678.065180 eV Total energy + Delta-G solvation = -3040.396455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54461 -38.39121 -37.64796 -34.19679 -33.01204 -31.57458 -30.44037 -29.23341 -26.05728 -24.81277 -23.08734 -22.60722 -20.96918 -18.91222 -18.48086 -17.37936 -16.84630 -16.01893 -15.78466 -15.00087 -14.86524 -14.31111 -14.01239 -13.82013 -13.52667 -13.17568 -13.07093 -12.81995 -12.56057 -12.13927 -11.91521 -11.75252 -11.52430 -11.25153 -11.13486 -10.99617 -10.55826 -10.43256 -9.87485 -9.78485 -9.37860 -8.93858 -8.61027 -8.47253 -8.23410 -6.73199 -4.01077 0.71078 1.58332 2.14447 2.95162 3.12913 3.14468 3.20396 3.68934 3.98191 4.10692 4.28988 4.69740 4.84536 4.91079 5.04228 5.10573 5.11491 5.17621 5.33293 5.40591 5.61633 5.69458 5.71187 5.74845 5.96505 6.09589 6.13316 6.53091 7.08775 7.26564 7.77036 8.11890 8.31910 8.88077 9.22124 9.80158 10.42376 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.003805 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.041617 B = 7357.195941 C = 7668.779116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.176 3.824 5 H 0.076 0.924 6 C -0.166 4.166 7 C -0.009 4.009 8 N -0.439 5.439 9 C 0.036 3.964 10 C -0.222 4.222 11 C 0.488 3.512 12 O -0.599 6.599 13 N -0.524 5.524 14 C -0.285 4.285 15 H 0.113 0.887 16 C 0.024 3.976 17 N -0.876 5.876 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.265 1.265 22 S 0.195 5.805 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.179 0.821 32 H 0.396 0.604 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -14.648 -7.406 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.115 3.885 5 H 0.094 0.906 6 C -0.225 4.225 7 C -0.285 4.285 8 N -0.153 5.153 9 C -0.121 4.121 10 C -0.348 4.348 11 C 0.275 3.725 12 O -0.487 6.487 13 N -0.157 5.157 14 C -0.417 4.417 15 H 0.131 0.869 16 C -0.181 4.181 17 N -0.515 5.515 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.189 1.189 22 S 0.451 5.549 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.196 0.804 32 H 0.231 0.769 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.003 -15.264 -6.906 17.226 hybrid contribution -0.333 1.619 0.087 1.655 sum -4.336 -13.645 -6.820 15.859 Atomic orbital electron populations 1.21723 0.93635 1.01998 1.03393 1.22558 0.95844 0.84049 0.99934 1.88113 1.19328 1.25811 1.94910 1.20270 0.82454 0.90919 0.94889 0.90630 1.22244 1.01694 1.03235 0.95304 1.26813 1.01000 0.97514 1.03180 1.65807 1.27609 0.98144 1.23723 1.22388 0.95476 0.99206 0.95079 1.26455 1.04033 0.97989 1.06311 1.16268 0.87221 0.82311 0.86712 1.90674 1.33782 1.76463 1.47779 1.41811 1.31435 1.06097 1.36347 1.19968 1.15018 0.88852 1.17818 0.86949 1.25494 0.96687 0.97883 0.98029 1.69608 1.26992 1.17140 1.37722 0.85694 0.78844 0.79026 0.79901 1.19916 1.20495 1.18937 1.83655 1.32350 1.04129 1.34762 0.91233 0.91753 0.91760 0.93345 0.93367 0.91252 0.91766 0.90753 0.80418 0.76934 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.98 9.95 -35.23 -0.35 -5.33 16 4 C 0.18 2.26 3.22 -27.88 -0.09 2.17 16 5 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 6 C -0.17 -1.80 9.51 37.16 0.35 -1.45 16 7 C -0.01 -0.15 6.27 -13.31 -0.08 -0.24 16 8 N -0.44 -8.19 10.48 -11.25 -0.12 -8.31 16 9 C 0.04 0.69 10.99 -18.46 -0.20 0.49 16 10 C -0.22 -4.68 6.52 -36.76 -0.24 -4.92 16 11 C 0.49 12.23 7.73 -12.90 -0.10 12.13 16 12 O -0.60 -16.81 16.54 5.16 0.09 -16.73 16 13 N -0.52 -13.37 5.26 -12.20 -0.06 -13.43 16 14 C -0.29 -7.70 9.68 -15.01 -0.15 -7.85 16 15 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 16 C 0.02 0.62 5.50 -17.46 -0.10 0.53 16 17 N -0.88 -22.64 13.05 55.50 0.72 -21.91 16 18 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 S 0.20 3.37 23.00 -107.50 -2.47 0.89 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 27 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.18 3.23 7.18 -52.49 -0.38 2.85 16 32 H 0.40 9.58 6.62 -40.82 -0.27 9.31 16 33 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -31.07 306.91 -6.49 -37.56 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.91 Total: 7.07 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 0.02 Total: 0.71 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.54 Total: -43.66 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.27 Total: -22.06 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.47 Total: 0.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.07 -6.49 -37.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.533 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds