Wall clock time and date at job start Mon Mar 30 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47284 * 2 1 4 4 C 1.42912 * 113.99745 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46931 * 330.00104 * 4 3 2 6 6 C 1.52998 * 109.46857 * 90.00192 * 4 3 2 7 7 C 1.50701 * 109.46552 * 209.99998 * 4 3 2 8 8 N 1.29374 * 124.70794 * 315.02230 * 7 4 3 9 9 C 1.30939 * 117.47143 * 179.73991 * 8 7 4 10 10 C 1.36781 * 113.92078 * 0.02562 * 9 8 7 11 11 C 1.46561 * 126.18070 * 179.97438 * 10 9 8 12 12 O 1.21728 * 119.99768 * 180.02562 * 11 10 9 13 13 N 1.34778 * 119.99975 * 0.02562 * 11 10 9 14 14 C 1.36895 * 119.99911 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99682 * 0.02562 * 14 13 11 16 16 C 1.39002 * 119.99756 * 179.97438 * 14 13 11 17 17 N 1.31394 * 120.00206 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99898 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47170 * 89.99945 * 18 16 14 20 20 H 1.48503 * 109.46933 * 209.99843 * 18 16 14 21 21 H 1.48500 * 109.46983 * 329.99777 * 18 16 14 22 22 S 1.70923 * 124.69729 * 134.72738 * 7 4 3 23 23 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46991 * 299.99955 * 1 2 3 25 25 H 1.09003 * 109.47348 * 59.99539 * 1 2 3 26 26 H 1.09002 * 109.46762 * 239.99746 * 2 1 3 27 27 H 1.09003 * 109.47348 * 120.00461 * 2 1 3 28 28 H 1.08999 * 109.46653 * 179.97438 * 6 4 3 29 29 H 1.08997 * 109.47390 * 299.99574 * 6 4 3 30 30 H 1.09001 * 109.47421 * 60.00213 * 6 4 3 31 31 H 1.07995 * 123.04502 * 179.97438 * 9 8 7 32 32 H 0.96992 * 119.99817 * 359.97438 * 13 11 10 33 33 H 0.97001 * 120.00162 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8636 0.6013 0.5129 6 6 3.9387 1.5004 -1.4433 7 6 3.8348 2.7261 0.7099 8 7 3.2781 3.8803 0.5319 9 6 3.7397 4.8876 1.2295 10 6 4.7712 4.5573 2.0649 11 6 5.4845 5.4707 2.9620 12 8 6.3907 5.0542 3.6599 13 7 5.1372 6.7719 3.0142 14 6 5.8038 7.6252 3.8518 15 1 6.6083 7.2558 4.4704 16 6 5.4459 8.9673 3.9052 17 7 4.4681 9.4171 3.1515 18 14 6.3560 10.1319 5.0476 19 1 7.5129 10.7253 4.3303 20 1 5.4376 11.2135 5.4860 21 1 6.8407 9.3827 6.2346 22 16 5.0873 2.8349 1.8679 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.0253 1.5869 -1.4437 29 1 3.6466 0.5847 -1.9572 30 1 3.5061 2.3591 -1.9568 31 1 3.3426 5.8889 1.1519 32 1 4.4154 7.1039 2.4579 33 1 4.2185 10.3537 3.1885 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339922046.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:13 Heat of formation + Delta-G solvation = -69.280668 kcal Electronic energy + Delta-G solvation = -17719.423803 eV Core-core repulsion = 14678.065180 eV Total energy + Delta-G solvation = -3041.358622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04913 -39.96548 -38.98913 -36.17740 -34.07468 -33.43097 -31.42239 -30.60617 -27.54040 -26.56948 -24.08756 -23.65490 -22.56687 -20.53785 -20.29442 -18.86705 -18.29773 -17.26264 -16.76571 -16.63781 -16.29634 -15.92740 -15.77190 -15.24056 -15.02128 -14.69541 -14.15609 -14.07026 -13.62914 -13.38515 -12.99409 -12.90131 -12.77147 -12.69257 -12.46635 -12.29499 -12.12701 -11.87528 -11.67097 -11.17513 -10.65746 -10.48968 -10.37870 -10.21654 -9.92848 -8.63467 -6.07096 -0.78370 0.12118 0.65247 1.32854 1.41219 1.53874 1.55737 2.23443 2.24689 2.75211 3.01506 3.10367 3.14528 3.73265 4.03990 4.07357 4.11323 4.25125 4.34618 4.37740 4.53454 4.64934 4.82147 4.90967 5.03458 5.06386 5.25977 5.27852 5.30909 5.79641 6.21550 6.36769 6.64666 6.91459 7.28364 7.84994 8.53079 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.003805 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.041617 B = 7357.195941 C = 7668.779116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.392 6.392 4 C 0.168 3.832 5 H 0.109 0.891 6 C -0.162 4.162 7 C 0.020 3.980 8 N -0.466 5.466 9 C 0.064 3.936 10 C -0.277 4.277 11 C 0.493 3.507 12 O -0.635 6.635 13 N -0.535 5.535 14 C -0.333 4.333 15 H 0.090 0.910 16 C -0.007 4.007 17 N -0.903 5.903 18 Si 1.004 2.996 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.268 1.268 22 S 0.243 5.757 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.183 0.817 32 H 0.399 0.601 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 -16.749 -8.507 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.312 6.312 4 C 0.107 3.893 5 H 0.127 0.873 6 C -0.221 4.221 7 C -0.255 4.255 8 N -0.181 5.181 9 C -0.094 4.094 10 C -0.402 4.402 11 C 0.281 3.719 12 O -0.526 6.526 13 N -0.168 5.168 14 C -0.463 4.463 15 H 0.108 0.892 16 C -0.209 4.209 17 N -0.542 5.542 18 Si 0.825 3.175 19 H -0.192 1.192 20 H -0.191 1.191 21 H -0.193 1.193 22 S 0.500 5.500 23 H 0.114 0.886 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.200 0.800 32 H 0.234 0.766 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.498 -17.373 -8.017 19.655 hybrid contribution -0.310 1.910 0.245 1.951 sum -4.808 -15.463 -7.772 17.962 Atomic orbital electron populations 1.21764 0.93269 1.03388 1.02332 1.22848 0.96214 0.82413 1.01666 1.88080 1.19391 1.28551 1.95129 1.20651 0.82940 0.89714 0.96040 0.87336 1.22242 1.02114 1.03987 0.93748 1.27829 0.98726 0.98301 1.00686 1.65967 1.28688 0.98720 1.24680 1.22555 0.93806 0.99819 0.93270 1.26120 1.05979 1.00026 1.08044 1.16750 0.86455 0.82513 0.86195 1.90620 1.35372 1.77279 1.49303 1.41756 1.31861 1.06330 1.36830 1.19892 1.16386 0.90179 1.19882 0.89167 1.26283 0.97118 0.98515 0.99004 1.69660 1.27928 1.17764 1.38800 0.84775 0.77941 0.76967 0.77770 1.19156 1.19112 1.19292 1.83445 1.31807 1.00873 1.33842 0.88632 0.93255 0.92388 0.91005 0.92112 0.90288 0.88723 0.92719 0.79982 0.76612 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.04 0.70 6.47 71.98 0.47 1.16 16 3 O -0.39 -9.59 9.95 -148.98 -1.48 -11.07 16 4 C 0.17 3.70 3.22 29.85 0.10 3.80 16 5 H 0.11 1.71 7.78 -2.39 -0.02 1.69 16 6 C -0.16 -2.92 9.51 71.98 0.68 -2.24 16 7 C 0.02 0.62 6.27 88.47 0.55 1.17 16 8 N -0.47 -16.76 10.48 -189.51 -1.99 -18.74 16 9 C 0.06 2.47 10.99 84.48 0.93 3.39 16 10 C -0.28 -11.70 6.52 24.10 0.16 -11.55 16 11 C 0.49 25.57 7.73 86.41 0.67 26.24 16 12 O -0.64 -36.94 16.54 -4.44 -0.07 -37.01 16 13 N -0.53 -28.49 5.26 -310.72 -1.64 -30.13 16 14 C -0.33 -18.83 9.68 84.09 0.81 -18.02 16 15 H 0.09 5.36 7.15 -2.91 -0.02 5.34 16 16 C -0.01 -0.34 5.50 84.94 0.47 0.12 16 17 N -0.90 -47.57 13.05 21.67 0.28 -47.28 16 18 Si 1.00 41.38 29.55 68.60 2.03 43.41 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 22 S 0.24 7.96 23.00 -56.49 -1.30 6.66 16 23 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.80 7.87 -2.39 -0.02 0.78 16 27 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.16 7.87 -2.39 -0.02 1.15 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.18 6.71 7.18 -2.91 -0.02 6.69 16 32 H 0.40 20.17 6.62 -92.71 -0.61 19.55 16 33 H 0.29 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -69.22 306.91 1.93 -67.29 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.52 Total: 24.24 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.58 Total: 2.63 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.34 Total: -96.16 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.56 Total: -48.08 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 7.96 SS G_CDS: -1.30 Total: 6.66 kcal Total: -69.22 1.93 -67.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922046.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.989 kcal (2) G-P(sol) polarization free energy of solvation -69.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds