Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46850 * 2 1 4 4 C 1.50701 * 109.47423 * 239.99873 * 2 1 3 5 5 H 1.07995 * 120.00052 * 275.00117 * 4 2 1 6 6 C 1.37876 * 119.99649 * 95.00132 * 4 2 1 7 7 N 1.31519 * 119.99837 * 184.92109 * 6 4 2 8 8 Si 1.86800 * 120.00258 * 4.91682 * 6 4 2 9 9 H 1.48494 * 109.47179 * 84.83780 * 8 6 4 10 10 H 1.48507 * 109.47278 * 204.83661 * 8 6 4 11 11 H 1.48506 * 109.47172 * 324.83265 * 8 6 4 12 12 N 1.46506 * 109.47235 * 120.00003 * 2 1 3 13 13 C 1.46497 * 119.99934 * 59.99925 * 12 2 1 14 14 S 1.65603 * 119.99788 * 240.00333 * 12 2 1 15 15 O 1.42095 * 106.40204 * 336.45554 * 14 12 2 16 16 O 1.42098 * 106.39891 * 203.53633 * 14 12 2 17 17 C 1.76202 * 107.21984 * 89.99934 * 14 12 2 18 18 C 1.38221 * 119.61791 * 89.99556 * 17 14 12 19 19 C 1.38634 * 119.16234 * 180.02562 * 18 17 14 20 20 C 1.38668 * 118.41574 * 359.97438 * 19 18 17 21 21 C 1.38177 * 119.16561 * 0.27896 * 20 19 18 22 22 N 1.31857 * 119.61810 * 270.01973 * 17 14 12 23 23 H 1.08999 * 109.47517 * 54.97871 * 1 2 3 24 24 H 1.09003 * 109.46937 * 174.98051 * 1 2 3 25 25 H 1.08999 * 109.47153 * 294.97458 * 1 2 3 26 26 H 0.97003 * 119.99673 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47289 * 269.99903 * 13 12 2 28 28 H 1.08996 * 109.47110 * 30.00319 * 13 12 2 29 29 H 1.09000 * 109.46681 * 150.00011 * 13 12 2 30 30 H 1.07998 * 120.42109 * 0.02562 * 18 17 14 31 31 H 1.07998 * 120.78771 * 180.02562 * 19 18 17 32 32 H 1.08006 * 120.41464 * 180.02562 * 20 19 18 33 33 H 1.08010 * 119.61634 * 179.69827 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7854 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6131 -3.4622 8 14 2.3136 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7822 10 1 2.1058 2.3992 -3.6928 11 1 1.1986 2.3275 -1.4449 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1143 2.2863 15 8 3.5793 1.1830 1.5749 16 8 3.7117 -0.8788 2.9815 17 6 1.8960 0.8536 3.4711 18 6 1.5431 0.1489 4.6067 19 6 0.6968 0.7395 5.5324 20 6 0.2356 2.0227 5.2804 21 6 0.6272 2.6633 4.1204 22 7 1.4376 2.0724 3.2640 23 1 -0.3634 0.5897 -0.8416 24 1 -0.3633 -1.0238 -0.0899 25 1 -0.3633 0.4339 0.9316 26 1 2.9363 -0.1047 -4.2556 27 1 0.7376 -2.1444 1.9994 28 1 1.5295 -2.5968 0.4709 29 1 2.4629 -2.5818 1.9864 30 1 1.9219 -0.8491 4.7707 31 1 0.4045 0.2129 6.4289 32 1 -0.4248 2.5136 5.9800 33 1 0.2683 3.6610 3.9144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340079200.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = -28.073014 kcal Electronic energy + Delta-G solvation = -19312.551372 eV Core-core repulsion = 16272.979647 eV Total energy + Delta-G solvation = -3039.571724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11811 -36.77560 -36.32897 -35.28483 -32.68278 -32.46496 -31.56856 -29.94650 -25.69641 -25.19090 -24.12164 -23.72299 -20.64896 -18.89942 -17.67357 -17.40711 -16.63983 -16.48078 -16.06093 -15.28835 -14.81363 -14.33862 -14.13614 -13.64144 -13.37903 -13.19469 -12.64484 -12.46419 -12.42848 -11.94592 -11.84313 -11.56779 -11.35879 -11.14408 -11.04275 -10.78156 -10.63310 -10.32670 -10.16349 -9.76069 -9.60647 -9.56784 -9.33486 -8.58017 -8.08829 -6.16471 -4.16536 0.47937 0.87530 1.06212 3.25622 3.38089 3.42648 3.53230 3.68540 4.15651 4.22494 4.41712 4.59732 4.70710 4.82846 5.03397 5.16979 5.22810 5.43540 5.64206 5.70333 5.83689 6.00142 6.15288 6.35950 6.36569 6.39455 6.57933 6.64721 6.94966 7.18588 7.47071 7.61261 7.65893 8.43049 8.87178 9.44974 10.94649 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.007564 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.368317 B = 3700.959130 C = 4026.201210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.232 3.768 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.886 5.886 8 Si 0.864 3.136 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.966 5.966 13 C 0.090 3.910 14 S 2.674 3.326 15 O -0.933 6.933 16 O -0.966 6.966 17 C -0.437 4.437 18 C -0.089 4.089 19 C -0.094 4.094 20 C -0.130 4.130 21 C 0.077 3.923 22 N -0.389 5.389 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.268 0.732 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 2.423 16.748 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.129 3.871 3 H 0.081 0.919 4 C -0.554 4.554 5 H 0.102 0.898 6 C -0.125 4.125 7 N -0.522 5.522 8 Si 0.690 3.310 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.807 5.807 13 C -0.056 4.056 14 S 2.760 3.240 15 O -0.923 6.923 16 O -0.955 6.955 17 C -0.653 4.653 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.150 4.150 21 C -0.084 4.084 22 N -0.098 5.098 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.652 2.954 15.863 17.097 hybrid contribution -1.081 0.757 1.172 1.764 sum -6.733 3.710 17.034 18.689 Atomic orbital electron populations 1.22217 0.98234 1.01127 0.98891 1.19226 0.91281 0.93760 0.82850 0.91863 1.21133 1.44224 0.95945 0.94105 0.89824 1.24986 0.93634 0.98623 0.95251 1.69887 1.44430 1.36209 1.01724 0.87033 0.80676 0.86086 0.77170 1.18649 1.21256 1.18548 1.57786 1.70340 1.19475 1.33085 1.21437 0.99018 0.81886 1.03264 1.03151 0.74391 0.73594 0.72897 1.93574 1.72740 1.55672 1.70329 1.93525 1.67845 1.58755 1.75393 1.34427 1.16453 1.00547 1.13918 1.22027 0.94939 1.00979 0.93097 1.21695 0.95897 0.95226 0.99292 1.22402 0.98854 0.95507 0.98216 1.23139 0.94146 1.00458 0.90609 1.67863 1.05551 1.07244 1.29176 0.92569 0.92838 0.95828 0.92246 0.94387 0.89128 0.91237 0.83044 0.84002 0.84207 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.10 37.16 0.34 -2.63 16 2 C 0.23 5.46 2.28 -69.08 -0.16 5.30 16 3 H 0.06 1.60 4.06 -51.93 -0.21 1.39 16 4 C -0.51 -13.95 8.72 -34.44 -0.30 -14.25 16 5 H 0.08 2.38 6.82 -52.49 -0.36 2.02 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 8 Si 0.86 21.97 26.99 -169.99 -4.59 17.38 16 9 H -0.26 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.28 6.82 56.52 0.39 -5.90 16 12 N -0.97 -19.95 3.06 -115.85 -0.35 -20.31 16 13 C 0.09 1.53 9.81 59.85 0.59 2.12 16 14 S 2.67 54.52 5.75 -107.50 -0.62 53.90 16 15 O -0.93 -22.66 16.42 -57.17 -0.94 -23.60 16 16 O -0.97 -19.53 15.86 -57.17 -0.91 -20.43 16 17 C -0.44 -7.49 6.86 -17.55 -0.12 -7.61 16 18 C -0.09 -1.20 9.56 -39.44 -0.38 -1.58 16 19 C -0.09 -0.98 10.18 -39.28 -0.40 -1.37 16 20 C -0.13 -1.29 10.11 -39.44 -0.40 -1.68 16 21 C 0.08 0.98 11.18 -17.55 -0.20 0.79 16 22 N -0.39 -6.75 10.11 -12.45 -0.13 -6.88 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.05 1.02 7.84 -51.93 -0.41 0.62 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.62 6.56 -51.93 -0.34 1.28 16 29 H 0.07 1.09 7.02 -51.93 -0.36 0.73 16 30 H 0.15 1.75 7.61 -52.49 -0.40 1.35 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.16 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -34.18 293.28 -7.23 -41.41 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -3.77 Total: -1.54 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.12 Total: -18.75 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.29 Total: -52.79 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.85 Total: -44.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.59 Total: 17.38 kcal Atomic # 16 Polarization: 54.52 SS G_CDS: -0.62 Total: 53.90 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.18 -7.23 -41.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340079200.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.333 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds