Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46850 * 2 1 4 4 C 1.50701 * 109.47423 * 239.99873 * 2 1 3 5 5 H 1.07995 * 120.00052 * 275.00117 * 4 2 1 6 6 C 1.37876 * 119.99649 * 95.00132 * 4 2 1 7 7 N 1.31519 * 119.99837 * 184.92109 * 6 4 2 8 8 Si 1.86800 * 120.00258 * 4.91682 * 6 4 2 9 9 H 1.48494 * 109.47179 * 84.83780 * 8 6 4 10 10 H 1.48507 * 109.47278 * 204.83661 * 8 6 4 11 11 H 1.48506 * 109.47172 * 324.83265 * 8 6 4 12 12 N 1.46506 * 109.47235 * 120.00003 * 2 1 3 13 13 C 1.46497 * 119.99934 * 59.99925 * 12 2 1 14 14 S 1.65603 * 119.99788 * 240.00333 * 12 2 1 15 15 O 1.42095 * 106.40204 * 336.45554 * 14 12 2 16 16 O 1.42098 * 106.39891 * 203.53633 * 14 12 2 17 17 C 1.76202 * 107.21984 * 89.99934 * 14 12 2 18 18 C 1.38221 * 119.61791 * 89.99556 * 17 14 12 19 19 C 1.38634 * 119.16234 * 180.02562 * 18 17 14 20 20 C 1.38668 * 118.41574 * 359.97438 * 19 18 17 21 21 C 1.38177 * 119.16561 * 0.27896 * 20 19 18 22 22 N 1.31857 * 119.61810 * 270.01973 * 17 14 12 23 23 H 1.08999 * 109.47517 * 54.97871 * 1 2 3 24 24 H 1.09003 * 109.46937 * 174.98051 * 1 2 3 25 25 H 1.08999 * 109.47153 * 294.97458 * 1 2 3 26 26 H 0.97003 * 119.99673 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47289 * 269.99903 * 13 12 2 28 28 H 1.08996 * 109.47110 * 30.00319 * 13 12 2 29 29 H 1.09000 * 109.46681 * 150.00011 * 13 12 2 30 30 H 1.07998 * 120.42109 * 0.02562 * 18 17 14 31 31 H 1.07998 * 120.78771 * 180.02562 * 19 18 17 32 32 H 1.08006 * 120.41464 * 180.02562 * 20 19 18 33 33 H 1.08010 * 119.61634 * 179.69827 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7854 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6131 -3.4622 8 14 2.3136 1.8791 -2.3173 9 1 3.5991 2.3949 -1.7822 10 1 2.1058 2.3992 -3.6928 11 1 1.1986 2.3275 -1.4449 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1143 2.2863 15 8 3.5793 1.1830 1.5749 16 8 3.7117 -0.8788 2.9815 17 6 1.8960 0.8536 3.4711 18 6 1.5431 0.1489 4.6067 19 6 0.6968 0.7395 5.5324 20 6 0.2356 2.0227 5.2804 21 6 0.6272 2.6633 4.1204 22 7 1.4376 2.0724 3.2640 23 1 -0.3634 0.5897 -0.8416 24 1 -0.3633 -1.0238 -0.0899 25 1 -0.3633 0.4339 0.9316 26 1 2.9363 -0.1047 -4.2556 27 1 0.7376 -2.1444 1.9994 28 1 1.5295 -2.5968 0.4709 29 1 2.4629 -2.5818 1.9864 30 1 1.9219 -0.8491 4.7707 31 1 0.4045 0.2129 6.4289 32 1 -0.4248 2.5136 5.9800 33 1 0.2683 3.6610 3.9144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340079200.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = -55.049403 kcal Electronic energy + Delta-G solvation = -19313.721156 eV Core-core repulsion = 16272.979647 eV Total energy + Delta-G solvation = -3040.741508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09617 -38.42906 -38.02885 -36.95992 -34.52023 -33.62652 -32.54988 -31.70035 -27.32705 -27.04302 -25.17329 -24.65655 -22.44443 -20.24559 -19.31914 -19.11644 -18.18541 -17.75421 -17.12993 -16.86206 -16.15751 -15.83221 -15.43894 -15.19408 -14.67853 -14.50860 -14.42243 -14.19203 -13.55856 -13.47948 -13.40039 -13.22399 -13.08748 -12.92174 -12.59882 -12.54564 -12.30076 -12.03909 -11.76632 -11.28675 -11.07093 -10.75805 -10.63125 -10.56542 -9.71310 -8.34147 -6.36606 -0.75277 -0.40084 0.18162 1.29374 1.39137 1.45609 1.94446 2.31678 2.50304 2.75622 3.01594 3.07765 3.69013 3.88115 3.98393 4.04135 4.05811 4.23280 4.46984 4.58799 4.68781 4.76414 4.83166 4.89287 4.94960 5.01890 5.13643 5.32688 5.44714 5.54313 5.55131 5.91652 6.31062 6.62838 6.69337 7.28737 8.81037 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.007564 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.368317 B = 3700.959130 C = 4026.201210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.235 3.765 3 H 0.044 0.956 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.906 3.094 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.240 1.240 12 N -0.980 5.980 13 C 0.085 3.915 14 S 2.685 3.315 15 O -0.988 6.988 16 O -0.975 6.975 17 C -0.461 4.461 18 C -0.091 4.091 19 C -0.086 4.086 20 C -0.103 4.103 21 C 0.064 3.936 22 N -0.439 5.439 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.269 0.731 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.165 0.835 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 3.295 20.654 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.131 3.869 3 H 0.062 0.938 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.731 3.269 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.163 1.163 12 N -0.820 5.820 13 C -0.059 4.059 14 S 2.777 3.223 15 O -0.978 6.978 16 O -0.965 6.965 17 C -0.682 4.682 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.098 4.098 22 N -0.149 5.149 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.183 0.817 31 H 0.207 0.793 32 H 0.208 0.792 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.280 3.763 19.699 21.698 hybrid contribution -0.322 0.491 0.286 0.653 sum -8.602 4.254 19.985 22.170 Atomic orbital electron populations 1.22071 0.95556 1.02039 0.99976 1.18996 0.93152 0.92363 0.82383 0.93774 1.21414 1.43231 0.95146 0.95767 0.92264 1.25620 0.94121 1.02047 0.95239 1.69985 1.47201 1.37498 1.02467 0.86353 0.80348 0.82261 0.77955 1.20690 1.19896 1.16335 1.57397 1.70358 1.20978 1.33291 1.21628 1.01233 0.79942 1.03148 1.02070 0.74364 0.72816 0.73060 1.93503 1.74809 1.57118 1.72353 1.93500 1.68629 1.59124 1.75236 1.33195 1.18631 1.01819 1.14563 1.22318 0.95116 1.01444 0.92399 1.22275 0.93929 0.95435 0.99642 1.22979 0.97215 0.94940 0.97139 1.23735 0.93287 1.01642 0.91147 1.67705 1.07697 1.07689 1.31833 0.93071 0.91756 0.93322 0.92222 0.90548 0.90732 0.90269 0.81737 0.79350 0.79196 0.79316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 9.10 71.98 0.65 -4.78 16 2 C 0.24 11.20 2.28 44.24 0.10 11.30 16 3 H 0.04 2.28 4.06 -2.39 -0.01 2.27 16 4 C -0.52 -29.00 8.72 25.60 0.22 -28.77 16 5 H 0.06 3.54 6.82 -2.91 -0.02 3.52 16 6 C 0.03 1.75 5.47 84.65 0.46 2.21 16 7 N -0.93 -57.82 13.96 21.45 0.30 -57.52 16 8 Si 0.91 46.37 26.99 68.60 1.85 48.23 16 9 H -0.28 -15.12 7.11 99.48 0.71 -14.41 16 10 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.24 -11.31 6.82 99.48 0.68 -10.63 16 12 N -0.98 -40.56 3.06 -520.45 -1.59 -42.15 16 13 C 0.09 2.84 9.81 127.77 1.25 4.09 16 14 S 2.68 110.43 5.75 -56.49 -0.32 110.10 16 15 O -0.99 -49.86 16.42 -128.00 -2.10 -51.96 16 16 O -0.98 -39.50 15.86 -128.00 -2.03 -41.53 16 17 C -0.46 -15.05 6.86 84.69 0.58 -14.47 16 18 C -0.09 -2.12 9.56 22.36 0.21 -1.90 16 19 C -0.09 -1.27 10.18 22.47 0.23 -1.04 16 20 C -0.10 -1.40 10.11 22.36 0.23 -1.18 16 21 C 0.06 1.37 11.18 84.67 0.95 2.32 16 22 N -0.44 -14.44 10.11 -193.31 -1.95 -16.39 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.06 2.38 7.84 -2.39 -0.02 2.36 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 2.71 6.56 -2.39 -0.02 2.69 16 29 H 0.08 2.44 7.02 -2.39 -0.02 2.43 16 30 H 0.17 3.25 7.61 -2.91 -0.02 3.22 16 31 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 33 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -79.64 293.28 0.13 -79.52 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.09 Total: 3.94 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 4.89 Total: -32.22 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -3.25 Total: -116.07 kcal Atomic # 8 Polarization: -89.36 SS G_CDS: -4.13 Total: -93.50 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.85 Total: 48.23 kcal Atomic # 16 Polarization: 110.43 SS G_CDS: -0.32 Total: 110.10 kcal Total: -79.64 0.13 -79.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340079200.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.466 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds