Wall clock time and date at job start Mon Mar 30 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47249 * 2 1 4 4 C 1.50698 * 109.47279 * 120.00416 * 2 1 3 5 5 H 1.07998 * 120.00518 * 120.00063 * 4 2 1 6 6 C 1.37876 * 119.99767 * 299.99590 * 4 2 1 7 7 N 1.31517 * 120.00033 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47196 * 90.00065 * 8 6 4 10 10 H 1.48495 * 109.47231 * 210.00055 * 8 6 4 11 11 H 1.48501 * 109.47235 * 330.00232 * 8 6 4 12 12 N 1.46504 * 109.47110 * 240.00242 * 2 1 3 13 13 C 1.46501 * 119.99854 * 300.00116 * 12 2 1 14 14 S 1.65591 * 120.00068 * 119.99915 * 12 2 1 15 15 O 1.42106 * 106.40347 * 156.46176 * 14 12 2 16 16 O 1.42099 * 106.40623 * 23.53962 * 14 12 2 17 17 C 1.76203 * 107.22151 * 270.00030 * 14 12 2 18 18 C 1.38225 * 119.61887 * 149.99861 * 17 14 12 19 19 C 1.38635 * 119.15939 * 180.02562 * 18 17 14 20 20 C 1.38675 * 118.41956 * 0.02562 * 19 18 17 21 21 C 1.38186 * 119.16332 * 0.27967 * 20 19 18 22 22 N 1.31860 * 119.61572 * 330.02619 * 17 14 12 23 23 H 1.09004 * 109.46900 * 59.99604 * 1 2 3 24 24 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46761 * 300.00263 * 1 2 3 26 26 H 0.97002 * 120.00032 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47198 * 270.00081 * 13 12 2 28 28 H 1.09003 * 109.46922 * 29.99788 * 13 12 2 29 29 H 1.09002 * 109.47022 * 149.99597 * 13 12 2 30 30 H 1.07997 * 120.42054 * 0.04783 * 18 17 14 31 31 H 1.07998 * 120.78847 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.41399 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.61418 * 179.70216 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1119 11 1 2.4858 -2.5664 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1142 -2.2862 15 8 3.7117 -0.8789 -2.9816 16 8 3.5794 1.1830 -1.5749 17 6 1.8960 0.8536 -3.4711 18 6 2.2707 2.0301 -4.0926 19 6 1.4179 2.6039 -5.0229 20 6 0.2146 1.9703 -5.2941 21 6 -0.0950 0.7995 -4.6285 22 7 0.7437 0.2785 -3.7543 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7089 1.1612 3.4844 27 1 2.4156 -2.7377 -0.9718 28 1 0.6903 -2.3001 -0.9847 29 1 1.6237 -2.2851 -2.5003 30 1 3.2159 2.4961 -3.8567 31 1 1.6845 3.5224 -5.5244 32 1 -0.4741 2.3893 -6.0128 33 1 -1.0324 0.3026 -4.8306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340079202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:11 Heat of formation + Delta-G solvation = -29.744535 kcal Electronic energy + Delta-G solvation = -19195.327087 eV Core-core repulsion = 16155.682880 eV Total energy + Delta-G solvation = -3039.644207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04993 -36.68255 -36.12733 -35.33579 -32.71035 -32.47009 -31.50902 -29.02245 -25.52456 -25.10999 -24.07070 -23.69202 -20.67806 -18.85916 -17.63392 -16.96411 -16.51267 -16.11647 -15.95960 -15.37046 -14.73694 -14.55441 -13.96113 -13.50801 -13.34869 -13.03498 -12.75208 -12.47275 -11.96432 -11.72368 -11.55829 -11.31467 -11.16054 -11.05777 -10.92462 -10.75638 -10.42148 -10.20821 -10.09409 -9.97559 -9.56973 -9.50288 -9.19629 -8.41621 -7.90379 -6.03508 -4.09986 0.61444 0.94632 1.12038 3.32578 3.36727 3.38959 3.43064 3.55353 4.14183 4.41704 4.46288 4.65833 4.82627 4.90181 5.09942 5.22709 5.28101 5.47528 5.69817 5.79234 5.89979 6.31578 6.41760 6.46427 6.72345 6.86042 6.89791 7.08968 7.49547 7.63220 7.68998 7.83390 8.08411 8.31314 8.92430 9.55418 11.02261 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.006338 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.310534 B = 4416.973327 C = 4644.241124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.962 5.962 13 C 0.113 3.887 14 S 2.689 3.311 15 O -0.965 6.965 16 O -0.945 6.945 17 C -0.430 4.430 18 C -0.092 4.092 19 C -0.090 4.090 20 C -0.132 4.132 21 C 0.080 3.920 22 N -0.393 5.393 23 H 0.011 0.989 24 H 0.035 0.965 25 H 0.091 0.909 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 1.766 -14.060 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.557 4.557 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.804 5.804 13 C -0.033 4.033 14 S 2.773 3.227 15 O -0.955 6.955 16 O -0.935 6.935 17 C -0.647 4.647 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.152 4.152 21 C -0.081 4.081 22 N -0.103 5.103 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.166 1.176 -13.524 13.747 hybrid contribution -0.353 0.737 -0.019 0.818 sum -2.519 1.913 -13.544 13.908 Atomic orbital electron populations 1.22089 0.98135 0.99884 1.00475 1.18814 0.91538 0.93038 0.80200 0.92364 1.21328 1.31546 1.13003 0.89822 0.91736 1.24911 0.94971 0.95044 0.98992 1.69872 1.36568 1.22826 1.23734 0.86474 0.78601 0.79997 0.82199 1.20564 1.21248 1.19811 1.57141 1.69987 1.19641 1.33615 1.21189 1.01609 0.81055 0.99464 1.02499 0.73899 0.73576 0.72729 1.93549 1.68356 1.58497 1.75052 1.93612 1.73127 1.56389 1.70372 1.34400 1.08185 1.05165 1.16908 1.21903 1.00832 0.94138 0.94419 1.21668 0.93902 0.99687 0.96468 1.22367 0.97169 0.96280 0.99406 1.23076 0.98904 0.93628 0.92457 1.67850 1.00592 1.30482 1.11369 0.97034 0.94572 0.89016 0.92738 0.93216 0.90838 0.92646 0.83450 0.83966 0.84234 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.27 6.67 2.62 -69.08 -0.18 6.48 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 4 C -0.52 -14.00 8.37 -34.44 -0.29 -14.29 16 5 H 0.06 1.73 7.65 -52.49 -0.40 1.32 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 12 N -0.96 -20.86 3.00 -115.85 -0.35 -21.21 16 13 C 0.11 2.12 9.53 59.85 0.57 2.69 16 14 S 2.69 55.28 5.61 -107.50 -0.60 54.68 16 15 O -0.96 -20.68 17.09 -57.17 -0.98 -21.66 16 16 O -0.95 -21.73 16.21 -57.17 -0.93 -22.66 16 17 C -0.43 -7.56 6.77 -17.54 -0.12 -7.68 16 18 C -0.09 -1.35 9.57 -39.44 -0.38 -1.72 16 19 C -0.09 -1.02 10.18 -39.27 -0.40 -1.42 16 20 C -0.13 -1.38 10.11 -39.44 -0.40 -1.78 16 21 C 0.08 1.01 11.18 -17.55 -0.20 0.81 16 22 N -0.39 -6.52 10.23 -12.45 -0.13 -6.65 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.04 0.79 6.66 -51.93 -0.35 0.45 16 25 H 0.09 2.36 6.07 -51.92 -0.32 2.04 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 29 H 0.05 0.92 7.79 -51.93 -0.40 0.52 16 30 H 0.15 1.90 7.94 -52.49 -0.42 1.48 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -32.86 295.12 -7.91 -40.76 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -3.82 Total: -1.14 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.15 Total: -18.38 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.15 Total: -52.20 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.90 Total: -44.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 55.28 SS G_CDS: -0.60 Total: 54.68 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.86 -7.91 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340079202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.019 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds