Wall clock time and date at job start Mon Mar 30 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47249 * 2 1 4 4 C 1.50698 * 109.47279 * 120.00416 * 2 1 3 5 5 H 1.07998 * 120.00518 * 120.00063 * 4 2 1 6 6 C 1.37876 * 119.99767 * 299.99590 * 4 2 1 7 7 N 1.31517 * 120.00033 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47196 * 90.00065 * 8 6 4 10 10 H 1.48495 * 109.47231 * 210.00055 * 8 6 4 11 11 H 1.48501 * 109.47235 * 330.00232 * 8 6 4 12 12 N 1.46504 * 109.47110 * 240.00242 * 2 1 3 13 13 C 1.46501 * 119.99854 * 300.00116 * 12 2 1 14 14 S 1.65591 * 120.00068 * 119.99915 * 12 2 1 15 15 O 1.42106 * 106.40347 * 156.46176 * 14 12 2 16 16 O 1.42099 * 106.40623 * 23.53962 * 14 12 2 17 17 C 1.76203 * 107.22151 * 270.00030 * 14 12 2 18 18 C 1.38225 * 119.61887 * 149.99861 * 17 14 12 19 19 C 1.38635 * 119.15939 * 180.02562 * 18 17 14 20 20 C 1.38675 * 118.41956 * 0.02562 * 19 18 17 21 21 C 1.38186 * 119.16332 * 0.27967 * 20 19 18 22 22 N 1.31860 * 119.61572 * 330.02619 * 17 14 12 23 23 H 1.09004 * 109.46900 * 59.99604 * 1 2 3 24 24 H 1.08995 * 109.47071 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46761 * 300.00263 * 1 2 3 26 26 H 0.97002 * 120.00032 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47198 * 270.00081 * 13 12 2 28 28 H 1.09003 * 109.46922 * 29.99788 * 13 12 2 29 29 H 1.09002 * 109.47022 * 149.99597 * 13 12 2 30 30 H 1.07997 * 120.42054 * 0.04783 * 18 17 14 31 31 H 1.07998 * 120.78847 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.41399 * 179.97438 * 20 19 18 33 33 H 1.07999 * 119.61418 * 179.70216 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1119 11 1 2.4858 -2.5664 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1142 -2.2862 15 8 3.7117 -0.8789 -2.9816 16 8 3.5794 1.1830 -1.5749 17 6 1.8960 0.8536 -3.4711 18 6 2.2707 2.0301 -4.0926 19 6 1.4179 2.6039 -5.0229 20 6 0.2146 1.9703 -5.2941 21 6 -0.0950 0.7995 -4.6285 22 7 0.7437 0.2785 -3.7543 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7089 1.1612 3.4844 27 1 2.4156 -2.7377 -0.9718 28 1 0.6903 -2.3001 -0.9847 29 1 1.6237 -2.2851 -2.5003 30 1 3.2159 2.4961 -3.8567 31 1 1.6845 3.5224 -5.5244 32 1 -0.4741 2.3893 -6.0128 33 1 -1.0324 0.3026 -4.8306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340079202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:11 Heat of formation + Delta-G solvation = -54.169103 kcal Electronic energy + Delta-G solvation = -19196.386216 eV Core-core repulsion = 16155.682880 eV Total energy + Delta-G solvation = -3040.703336 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07144 -38.36852 -37.91960 -37.01732 -34.54121 -33.62260 -32.54064 -30.90809 -27.29056 -27.01907 -25.16653 -24.70162 -22.52652 -20.26160 -19.13774 -18.59193 -18.23525 -17.37276 -17.16754 -17.03696 -16.38504 -15.81173 -15.30344 -15.06877 -14.77682 -14.57975 -14.19757 -13.73763 -13.53125 -13.41251 -13.27188 -13.17516 -12.96998 -12.79675 -12.59465 -12.35258 -12.20564 -12.11537 -11.88018 -11.15294 -11.05638 -10.67280 -10.55819 -10.49151 -9.64162 -8.10410 -6.24301 -0.64491 -0.40572 0.17363 1.45003 1.46554 1.56283 1.86014 2.45748 2.48173 2.66463 3.17845 3.34135 3.61673 3.86425 3.93986 3.99638 4.14923 4.22359 4.55833 4.73137 4.85737 4.87708 4.99670 5.01870 5.04320 5.14340 5.18173 5.54179 5.61458 5.73473 5.86725 6.11635 6.29704 6.59252 6.83036 7.44456 8.94303 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028850 B = 0.006338 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.310534 B = 4416.973327 C = 4644.241124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.960 3.040 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.266 1.266 12 N -0.974 5.974 13 C 0.110 3.890 14 S 2.698 3.302 15 O -0.985 6.985 16 O -0.984 6.984 17 C -0.459 4.459 18 C -0.108 4.108 19 C -0.087 4.087 20 C -0.108 4.108 21 C 0.068 3.932 22 N -0.424 5.424 23 H 0.025 0.975 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.265 0.735 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.186 0.814 32 H 0.191 0.809 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 2.187 -15.983 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.190 1.190 12 N -0.814 5.814 13 C -0.036 4.036 14 S 2.789 3.211 15 O -0.975 6.975 16 O -0.974 6.974 17 C -0.679 4.679 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.128 4.128 21 C -0.094 4.094 22 N -0.135 5.135 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.203 0.797 32 H 0.209 0.791 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.567 1.549 -15.402 15.885 hybrid contribution 0.007 0.694 0.370 0.787 sum -3.560 2.243 -15.032 15.610 Atomic orbital electron populations 1.21864 0.96952 1.00250 0.99933 1.18468 0.92279 0.91386 0.80973 0.95783 1.21634 1.31731 1.13123 0.91163 0.92187 1.25672 0.95140 0.95734 1.01728 1.69988 1.37285 1.23828 1.24402 0.85535 0.77928 0.79193 0.78850 1.20698 1.20414 1.19002 1.56994 1.70005 1.20816 1.33633 1.21326 1.01737 0.79685 1.00811 1.01683 0.73897 0.72815 0.72724 1.93508 1.69589 1.59293 1.75090 1.93552 1.74800 1.57250 1.71821 1.33316 1.09184 1.07137 1.18266 1.22202 1.02057 0.93460 0.95273 1.22219 0.93331 1.00749 0.95008 1.22970 0.97043 0.94474 0.98263 1.23786 0.99277 0.94747 0.91570 1.67742 1.00784 1.31666 1.13314 0.95557 0.93637 0.91375 0.92595 0.93484 0.90253 0.90678 0.82976 0.79669 0.79144 0.78640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.95 71.98 0.64 -5.55 16 2 C 0.27 14.07 2.62 44.24 0.12 14.19 16 3 H 0.02 1.40 6.91 -2.38 -0.02 1.39 16 4 C -0.54 -29.78 8.37 25.60 0.21 -29.57 16 5 H 0.06 3.29 7.65 -2.91 -0.02 3.27 16 6 C 0.02 0.94 5.30 84.65 0.45 1.38 16 7 N -0.92 -52.28 11.32 21.45 0.24 -52.03 16 8 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.97 -43.38 3.00 -520.43 -1.56 -44.94 16 13 C 0.11 4.16 9.53 127.77 1.22 5.38 16 14 S 2.70 114.94 5.61 -56.49 -0.32 114.62 16 15 O -0.98 -43.54 17.09 -128.00 -2.19 -45.73 16 16 O -0.98 -47.73 16.21 -128.00 -2.08 -49.81 16 17 C -0.46 -16.03 6.77 84.69 0.57 -15.46 16 18 C -0.11 -3.03 9.57 22.36 0.21 -2.82 16 19 C -0.09 -1.60 10.18 22.47 0.23 -1.37 16 20 C -0.11 -1.70 10.11 22.36 0.23 -1.48 16 21 C 0.07 1.48 11.18 84.67 0.95 2.42 16 22 N -0.42 -13.50 10.23 -193.31 -1.98 -15.48 16 23 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.04 2.01 6.66 -2.39 -0.02 2.00 16 25 H 0.07 3.57 6.07 -2.38 -0.01 3.55 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 2.87 6.43 -2.39 -0.02 2.85 16 29 H 0.07 2.51 7.79 -2.39 -0.02 2.49 16 30 H 0.15 3.91 7.94 -2.91 -0.02 3.88 16 31 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.86 295.12 0.09 -73.77 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.11 Total: 6.70 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.83 Total: -32.88 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.30 Total: -112.46 kcal Atomic # 8 Polarization: -91.28 SS G_CDS: -4.26 Total: -95.54 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 114.94 SS G_CDS: -0.32 Total: 114.62 kcal Total: -73.86 0.09 -73.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340079202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.598 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds